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Protein

Inner membrane ABC transporter permease protein YdcU

Gene

ydcU

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Probably part of the binding-protein-dependent transport system YdcSTUV; probably responsible for the translocation of the substrate across the membrane.

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciEcoCyc:YDCU-MONOMER.
ECOL316407:JW1437-MONOMER.
MetaCyc:YDCU-MONOMER.

Protein family/group databases

TCDBi3.A.1.11.9. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane ABC transporter permease protein YdcU
Gene namesi
Name:ydcU
Ordered Locus Names:b1442, JW1437
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13764. ydcU.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 25CytoplasmicSequence analysisAdd BLAST25
Transmembranei26 – 46HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini47 – 92PeriplasmicSequence analysisAdd BLAST46
Transmembranei93 – 113HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini114 – 122CytoplasmicSequence analysis9
Transmembranei123 – 143HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini144 – 154PeriplasmicSequence analysisAdd BLAST11
Transmembranei155 – 175HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini176 – 187CytoplasmicSequence analysisAdd BLAST12
Transmembranei188 – 208HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini209 – 230PeriplasmicSequence analysisAdd BLAST22
Transmembranei231 – 251HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini252CytoplasmicSequence analysis1
Transmembranei253 – 273HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini274 – 283PeriplasmicSequence analysis10
Transmembranei284 – 304HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini305 – 313CytoplasmicSequence analysis9

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000602421 – 313Inner membrane ABC transporter permease protein YdcUAdd BLAST313

Proteomic databases

PaxDbiP77156.
PRIDEiP77156.

Interactioni

Protein-protein interaction databases

BioGridi4260191. 92 interactors.
STRINGi511145.b1442.

Structurei

3D structure databases

ProteinModelPortaliP77156.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini87 – 302ABC transmembrane type-1PROSITE-ProRule annotationAdd BLAST216

Sequence similaritiesi

Contains 1 ABC transmembrane type-1 domain.PROSITE-ProRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105D81. Bacteria.
COG1176. LUCA.
HOGENOMiHOG000263581.
InParanoidiP77156.
KOiK02054.
OMAiAYYMARY.
PhylomeDBiP77156.

Family and domain databases

CDDicd06261. TM_PBP2. 1 hit.
Gene3Di1.10.3720.10. 1 hit.
InterProiIPR000515. MetI-like.
[Graphical view]
PfamiPF00528. BPD_transp_1. 1 hit.
[Graphical view]
SUPFAMiSSF161098. SSF161098. 1 hit.
PROSITEiPS50928. ABC_TM1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P77156-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAMNVLQSPS RPGLGKVSGF FWHNPGLGLF LLLLGPLMWF GIVYFGSLLT
60 70 80 90 100
LLWQGFYTFD DFTMSVTPEL TLANIRALFN PANYDIILRT LTMAVAVTIA
110 120 130 140 150
SAILAFPMAW YMARYTSGKM KAFFYIAVML PMWASYIVKA YAWTLLLAKD
160 170 180 190 200
GVAQWFLQHL GLEPLLTAFL TLPAVGGNTL STSGLGRFLV FLYIWLPFMI
210 220 230 240 250
LPVQAALERL PPSLLQASAD LGARPRQTFR YVVLPLAIPG IAAGSIFTFS
260 270 280 290 300
LTLGDFIVPQ LVGPPGYFIG NMVYSQQGAI GNMPMAAAFT LVPIILIALY
310
LAFVKRLGAF DAL
Length:313
Mass (Da):34,360
Last modified:February 1, 1997 - v1
Checksum:i1B7353627183720F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74524.1.
AP009048 Genomic DNA. Translation: BAA15071.1.
PIRiE64896.
RefSeqiNP_415959.1. NC_000913.3.
WP_001251304.1. NZ_CP014272.1.

Genome annotation databases

EnsemblBacteriaiAAC74524; AAC74524; b1442.
BAA15071; BAA15071; BAA15071.
GeneIDi945976.
KEGGiecj:JW1437.
eco:b1442.
PATRICi32118174. VBIEscCol129921_1507.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74524.1.
AP009048 Genomic DNA. Translation: BAA15071.1.
PIRiE64896.
RefSeqiNP_415959.1. NC_000913.3.
WP_001251304.1. NZ_CP014272.1.

3D structure databases

ProteinModelPortaliP77156.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260191. 92 interactors.
STRINGi511145.b1442.

Protein family/group databases

TCDBi3.A.1.11.9. the atp-binding cassette (abc) superfamily.

Proteomic databases

PaxDbiP77156.
PRIDEiP77156.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74524; AAC74524; b1442.
BAA15071; BAA15071; BAA15071.
GeneIDi945976.
KEGGiecj:JW1437.
eco:b1442.
PATRICi32118174. VBIEscCol129921_1507.

Organism-specific databases

EchoBASEiEB3527.
EcoGeneiEG13764. ydcU.

Phylogenomic databases

eggNOGiENOG4105D81. Bacteria.
COG1176. LUCA.
HOGENOMiHOG000263581.
InParanoidiP77156.
KOiK02054.
OMAiAYYMARY.
PhylomeDBiP77156.

Enzyme and pathway databases

BioCyciEcoCyc:YDCU-MONOMER.
ECOL316407:JW1437-MONOMER.
MetaCyc:YDCU-MONOMER.

Miscellaneous databases

PROiP77156.

Family and domain databases

CDDicd06261. TM_PBP2. 1 hit.
Gene3Di1.10.3720.10. 1 hit.
InterProiIPR000515. MetI-like.
[Graphical view]
PfamiPF00528. BPD_transp_1. 1 hit.
[Graphical view]
SUPFAMiSSF161098. SSF161098. 1 hit.
PROSITEiPS50928. ABC_TM1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYDCU_ECOLI
AccessioniPrimary (citable) accession number: P77156
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 118 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.