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Protein

Uncharacterized protein YdhT

Gene

ydhT

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6897-MONOMER.
ECOL316407:JW1659-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YdhT
Gene namesi
Name:ydhT
Ordered Locus Names:b1669, JW1659
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13954. ydhT.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 270270Uncharacterized protein YdhTPRO_0000168979Add
BLAST

Proteomic databases

PaxDbiP77147.

Expressioni

Inductioni

Up-regulated by the oxygen-responsive transcription factor FNR under anaerobic conditions. Repressed in the presence of nitrate or nitrite via the two-component systems NarXL and NarPQ, respectively.1 Publication

Interactioni

Protein-protein interaction databases

BioGridi4260263. 8 interactions.
DIPiDIP-11739N.
IntActiP77147. 3 interactions.
STRINGi511145.b1669.

Structurei

3D structure databases

ProteinModelPortaliP77147.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4108Y7C. Bacteria.
ENOG4111MKC. LUCA.
HOGENOMiHOG000120942.
InParanoidiP77147.
OMAiTGYKGHA.
OrthoDBiEOG6VQPRF.

Sequencei

Sequence statusi: Complete.

P77147-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIITQADLRE WRIGAVMYRW FLRHFPRGGS YADIHHALIE EGYTDWAESL
60 70 80 90 100
VEYAWKKWLA DENFAHQEVS SMQKLATDPG ERPFCSQFAR SDDHARIGCC
110 120 130 140 150
EDNARIATAG YAAQIASMGY SVRIGSVGFN SHIGSSGERA RVAVTGNSSR
160 170 180 190 200
ISSAGDSSRI ANTGMRVRVC TLGERCHVAS NGDLVQIASF GANARIANSG
210 220 230 240 250
DNVHIIASGE NSTVVSTGVV DSIILGPGGS AALAYHDGER VRFAVAIEGE
260 270
NNIRAGVRYR LNEQHQFVEC
Length:270
Mass (Da):29,341
Last modified:February 1, 1997 - v1
Checksum:iEC19C9FB2948D095
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U68703 Genomic DNA. Translation: AAB47945.1.
U00096 Genomic DNA. Translation: AAC74739.1.
AP009048 Genomic DNA. Translation: BAA15441.1.
PIRiE64924.
RefSeqiNP_416184.1. NC_000913.3.
WP_000587525.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74739; AAC74739; b1669.
BAA15441; BAA15441; BAA15441.
GeneIDi945960.
KEGGiecj:JW1659.
eco:b1669.
PATRICi32118644. VBIEscCol129921_1740.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U68703 Genomic DNA. Translation: AAB47945.1.
U00096 Genomic DNA. Translation: AAC74739.1.
AP009048 Genomic DNA. Translation: BAA15441.1.
PIRiE64924.
RefSeqiNP_416184.1. NC_000913.3.
WP_000587525.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP77147.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260263. 8 interactions.
DIPiDIP-11739N.
IntActiP77147. 3 interactions.
STRINGi511145.b1669.

Proteomic databases

PaxDbiP77147.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74739; AAC74739; b1669.
BAA15441; BAA15441; BAA15441.
GeneIDi945960.
KEGGiecj:JW1659.
eco:b1669.
PATRICi32118644. VBIEscCol129921_1740.

Organism-specific databases

EchoBASEiEB3712.
EcoGeneiEG13954. ydhT.

Phylogenomic databases

eggNOGiENOG4108Y7C. Bacteria.
ENOG4111MKC. LUCA.
HOGENOMiHOG000120942.
InParanoidiP77147.
OMAiTGYKGHA.
OrthoDBiEOG6VQPRF.

Enzyme and pathway databases

BioCyciEcoCyc:G6897-MONOMER.
ECOL316407:JW1659-MONOMER.

Miscellaneous databases

PROiP77147.

Family and domain databases

ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Analysis of the boundaries of Salmonella pathogenicity island 2 and the corresponding chromosomal region of Escherichia coli K-12."
    Hensel M., Shea J.E., Baeumler A.J., Gleeson C., Blattner F.R., Holden D.W.
    J. Bacteriol. 179:1105-1111(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. "Characterization of the Escherichia coli K-12 ydhYVWXUT operon: regulation by FNR, NarL and NarP."
    Partridge J.D., Browning D.F., Xu M., Newnham L.J., Scott C., Roberts R.E., Poole R.K., Green J.
    Microbiology 154:608-618(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: INDUCTION.
    Strain: K12.

Entry informationi

Entry nameiYDHT_ECOLI
AccessioniPrimary (citable) accession number: P77147
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: February 1, 1997
Last modified: January 20, 2016
This is version 93 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.