Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Inner membrane protein YqcE

Gene

yqcE

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:B2775-MONOMER.
ECOL316407:JW2746-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YqcE
Gene namesi
Name:yqcE
Synonyms:yqcF
Ordered Locus Names:b2775, JW2746
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13174. yqcE.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 88CytoplasmicSequence analysis
Transmembranei9 – 2921HelicalSequence analysisAdd
BLAST
Topological domaini30 – 4819PeriplasmicSequence analysisAdd
BLAST
Transmembranei49 – 6921HelicalSequence analysisAdd
BLAST
Topological domaini70 – 756CytoplasmicSequence analysis
Transmembranei76 – 9621HelicalSequence analysisAdd
BLAST
Transmembranei97 – 11721HelicalSequence analysisAdd
BLAST
Topological domaini118 – 13821CytoplasmicSequence analysisAdd
BLAST
Transmembranei139 – 15921HelicalSequence analysisAdd
BLAST
Topological domaini160 – 17112PeriplasmicSequence analysisAdd
BLAST
Transmembranei172 – 19221HelicalSequence analysisAdd
BLAST
Topological domaini193 – 21927CytoplasmicSequence analysisAdd
BLAST
Transmembranei220 – 24021HelicalSequence analysisAdd
BLAST
Topological domaini241 – 25919PeriplasmicSequence analysisAdd
BLAST
Transmembranei260 – 28021HelicalSequence analysisAdd
BLAST
Topological domaini281 – 29111CytoplasmicSequence analysisAdd
BLAST
Transmembranei292 – 31221HelicalSequence analysisAdd
BLAST
Topological domaini313 – 3131PeriplasmicSequence analysis
Transmembranei314 – 33421HelicalSequence analysisAdd
BLAST
Topological domaini335 – 35420CytoplasmicSequence analysisAdd
BLAST
Transmembranei355 – 37521HelicalSequence analysisAdd
BLAST
Topological domaini376 – 38813PeriplasmicSequence analysisAdd
BLAST
Transmembranei389 – 40921HelicalSequence analysisAdd
BLAST
Topological domaini410 – 42516CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 425425Inner membrane protein YqcEPRO_0000169328Add
BLAST

Proteomic databases

PaxDbiP77031.

Interactioni

Protein-protein interaction databases

BioGridi4262293. 139 interactions.
DIPiDIP-12849N.
IntActiP77031. 1 interaction.
MINTiMINT-1248595.
STRINGi511145.b2775.

Structurei

3D structure databases

ProteinModelPortaliP77031.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To E.coli YihN.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4108ITV. Bacteria.
ENOG410Y8F9. LUCA.
HOGENOMiHOG000124124.
OMAiPMIKATR.
OrthoDBiEOG6G7R0F.
PhylomeDBiP77031.

Family and domain databases

InterProiIPR011701. MFS.
IPR020846. MFS_dom.
[Graphical view]
PfamiPF07690. MFS_1. 1 hit.
[Graphical view]
SUPFAMiSSF103473. SSF103473. 1 hit.
PROSITEiPS50850. MFS. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P77031-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQHNSYRRWI TLAIISFSGG VSFDLAYLRY IYQIPMAKFM GFSNTEIGLI
60 70 80 90 100
MSTFGIAAII LYAPSGVIAD KFSHRKMITS AMIITGLLGL LMATYPPLWV
110 120 130 140 150
MLCIQIAFAI TTILMLWSVS IKAASLLGDH SEQGKIMGWM EGLRGVGVMS
160 170 180 190 200
LAVFTMWVFS RFAPDDSTSL KTVIIIYSVV YILLGILCWF FVSDNNNLRS
210 220 230 240 250
ANNEEKQSFQ LSDILAVLRI STTWYCSMVI FGVFTIYAIL SYSTNYLTEM
260 270 280 290 300
YGMSLVAASY MGIVINKIFR ALCGPLGGII TTYSKVKSPT RVIQILSVLG
310 320 330 340 350
LLTLTALLVT NSNPQSVAMG IGLILLLGFT CYASRGLYWA CPGEARTPSY
360 370 380 390 400
IMGTTVGICS VIGFLPDVFV YPIIGHWQDT LPAAEAYRNM WLMGMAALGM
410 420
VIVFTFLLFQ KIRTADSAPA MASSK
Length:425
Mass (Da):46,831
Last modified:February 1, 1997 - v1
Checksum:i538C547C7FC52DEA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75817.1.
AP009048 Genomic DNA. Translation: BAA16570.1.
PIRiC65059.
RefSeqiNP_417255.1. NC_000913.3.
WP_001164544.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75817; AAC75817; b2775.
BAA16570; BAA16570; BAA16570.
GeneIDi947248.
KEGGiecj:JW2746.
eco:b2775.
PATRICi32120960. VBIEscCol129921_2872.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75817.1.
AP009048 Genomic DNA. Translation: BAA16570.1.
PIRiC65059.
RefSeqiNP_417255.1. NC_000913.3.
WP_001164544.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP77031.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262293. 139 interactions.
DIPiDIP-12849N.
IntActiP77031. 1 interaction.
MINTiMINT-1248595.
STRINGi511145.b2775.

Proteomic databases

PaxDbiP77031.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75817; AAC75817; b2775.
BAA16570; BAA16570; BAA16570.
GeneIDi947248.
KEGGiecj:JW2746.
eco:b2775.
PATRICi32120960. VBIEscCol129921_2872.

Organism-specific databases

EchoBASEiEB2966.
EcoGeneiEG13174. yqcE.

Phylogenomic databases

eggNOGiENOG4108ITV. Bacteria.
ENOG410Y8F9. LUCA.
HOGENOMiHOG000124124.
OMAiPMIKATR.
OrthoDBiEOG6G7R0F.
PhylomeDBiP77031.

Enzyme and pathway databases

BioCyciEcoCyc:B2775-MONOMER.
ECOL316407:JW2746-MONOMER.

Miscellaneous databases

PROiP77031.

Family and domain databases

InterProiIPR011701. MFS.
IPR020846. MFS_dom.
[Graphical view]
PfamiPF07690. MFS_1. 1 hit.
[Graphical view]
SUPFAMiSSF103473. SSF103473. 1 hit.
PROSITEiPS50850. MFS. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Construction of a contiguous 874-kb sequence of the Escherichia coli-K12 genome corresponding to 50.0-68.8 min on the linkage map and analysis of its sequence features."
    Yamamoto Y., Aiba H., Baba T., Hayashi K., Inada T., Isono K., Itoh T., Kimura S., Kitagawa M., Makino K., Miki T., Mitsuhashi N., Mizobuchi K., Mori H., Nakade S., Nakamura Y., Nashimoto H., Oshima T.
    , Oyama S., Saito N., Sampei G., Satoh Y., Sivasundaram S., Tagami H., Takahashi H., Takeda J., Takemoto K., Uehara K., Wada C., Yamagata S., Horiuchi T.
    DNA Res. 4:91-113(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYQCE_ECOLI
AccessioniPrimary (citable) accession number: P77031
Secondary accession number(s): P76634, P76635
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: January 20, 2016
This is version 118 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.