Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Uncharacterized ABC transporter ATP-binding protein YnjD

Gene

ynjD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Probably part of a binding-protein-dependent transport system YnjCD. Probably responsible for energy coupling to the transport system.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi34 – 418ATPPROSITE-ProRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transport

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciEcoCyc:YNJD-MONOMER.
ECOL316407:JW5286-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized ABC transporter ATP-binding protein YnjD
Gene namesi
Name:ynjD
Ordered Locus Names:b1756, JW5286
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14006. ynjD.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 217217Uncharacterized ABC transporter ATP-binding protein YnjDPRO_0000093170Add
BLAST

Proteomic databases

PaxDbiP76909.
PRIDEiP76909.

Interactioni

Protein-protein interaction databases

BioGridi4262124. 122 interactions.
STRINGi511145.b1756.

Structurei

3D structure databases

ProteinModelPortaliP76909.
SMRiP76909. Positions 2-194.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini2 – 216215ABC transporterPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the ABC transporter superfamily.Curated
Contains 1 ABC transporter domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4108VGW. Bacteria.
COG4136. LUCA.
InParanoidiP76909.
KOiK05779.
OMAiPLFREVN.
PhylomeDBiP76909.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00005. ABC_tran. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
PROSITEiPS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P76909-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLCVKNVSLR LPESRLLTNV NFTVDKGDIV TLMGPSGCGK STLFSWMIGA
60 70 80 90 100
LAEQFSCTGE LWLNEQRIDI LPTAQRQIGI LFQDALLFDQ FSVGQNLLLA
110 120 130 140 150
LPATLKGNAR RNAVNDALER SGLEGAFHQD PATLSGGQRA RVALLRALLA
160 170 180 190 200
QPKALLLDEP FSRLDVALRD NFRQWVFSEV RALAIPVVQV THDLQDVPAD
210
SSVLDMAQWS ENYNKLR
Length:217
Mass (Da):24,017
Last modified:April 27, 2001 - v2
Checksum:i81A65D105D8779FF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74826.1.
AP009048 Genomic DNA. Translation: BAA15547.2.
PIRiD64935.
RefSeqiNP_416270.1. NC_000913.3.
WP_001300558.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74826; AAC74826; b1756.
BAA15547; BAA15547; BAA15547.
GeneIDi944965.
KEGGiecj:JW5286.
eco:b1756.
PATRICi32118823. VBIEscCol129921_1829.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74826.1.
AP009048 Genomic DNA. Translation: BAA15547.2.
PIRiD64935.
RefSeqiNP_416270.1. NC_000913.3.
WP_001300558.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76909.
SMRiP76909. Positions 2-194.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262124. 122 interactions.
STRINGi511145.b1756.

Proteomic databases

PaxDbiP76909.
PRIDEiP76909.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74826; AAC74826; b1756.
BAA15547; BAA15547; BAA15547.
GeneIDi944965.
KEGGiecj:JW5286.
eco:b1756.
PATRICi32118823. VBIEscCol129921_1829.

Organism-specific databases

EchoBASEiEB3762.
EcoGeneiEG14006. ynjD.

Phylogenomic databases

eggNOGiENOG4108VGW. Bacteria.
COG4136. LUCA.
InParanoidiP76909.
KOiK05779.
OMAiPLFREVN.
PhylomeDBiP76909.

Enzyme and pathway databases

BioCyciEcoCyc:YNJD-MONOMER.
ECOL316407:JW5286-MONOMER.

Miscellaneous databases

PROiP76909.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00005. ABC_tran. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
PROSITEiPS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYNJD_ECOLI
AccessioniPrimary (citable) accession number: P76909
Secondary accession number(s): P76225
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 27, 2001
Last sequence update: April 27, 2001
Last modified: September 7, 2016
This is version 118 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.