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Protein

Uncharacterized protein YgeH

Gene

ygeH

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi4 – 103OmpR/PhoB-typePROSITE-ProRule annotationAdd BLAST100

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:G7472-MONOMER.
ECOL316407:JW2820-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YgeH
Gene namesi
Name:ygeH
Ordered Locus Names:b2852, JW2820
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13038. ygeH.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001693401 – 458Uncharacterized protein YgeHAdd BLAST458

Proteomic databases

PaxDbiP76639.
PRIDEiP76639.

Interactioni

Protein-protein interaction databases

BioGridi4261612. 15 interactors.
IntActiP76639. 2 interactors.
STRINGi511145.b2852.

Structurei

3D structure databases

ProteinModelPortaliP76639.
SMRiP76639.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati372 – 405TPRAdd BLAST34

Sequence similaritiesi

Contains 1 OmpR/PhoB-type DNA-binding domain.PROSITE-ProRule annotation
Contains 1 TPR repeat.PROSITE-ProRule annotation

Keywords - Domaini

TPR repeat

Phylogenomic databases

eggNOGiENOG4108YAB. Bacteria.
COG0457. LUCA.
COG3710. LUCA.
HOGENOMiHOG000009549.
OMAiNFHNERI.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
1.25.40.10. 2 hits.
InterProiIPR001867. OmpR/PhoB-type_DNA-bd.
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR013026. TPR-contain_dom.
IPR011990. TPR-like_helical_dom.
IPR019734. TPR_repeat.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00486. Trans_reg_C. 1 hit.
[Graphical view]
SMARTiSM00028. TPR. 1 hit.
SM00862. Trans_reg_C. 1 hit.
[Graphical view]
SUPFAMiSSF46894. SSF46894. 1 hit.
SSF48452. SSF48452. 1 hit.
PROSITEiPS51755. OMPR_PHOB. 1 hit.
PS50005. TPR. 1 hit.
PS50293. TPR_REGION. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P76639-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDLENKFSYH FLEGLTLTED GILTQGNEQV YIPQKELGVL IVLLESAGHV
60 70 80 90 100
VLKDMIIESV WKNIIVSDES LTRCIYSLRC IFEKIGYDRC IETIYRKGYR
110 120 130 140 150
FSGQVFKTKI NEDNTSDYSI AIFPFTTSLN TLDPLILNQE LVQIISNKKI
160 170 180 190 200
DGLYTYPMAA TNFCNDHISQ NSFLSRFKPD YFVTGRINQN NAVNTLYIEL
210 220 230 240 250
IDAKNLFLIA SNHLPVDELH NTSQFIIDNI LQTVHKPERS VRLAKQDQGY
260 270 280 290 300
KNHYLSDEML AGKKELYDFT PESIYRAMTI FDRLQNKSDI QTLKTECYCL
310 320 330 340 350
LAECHMSLAL HGKSELELAA QKALELLDYV SDITTVDGKI LAIMGLITGL
360 370 380 390 400
SGQAKVSHIL FEQAKIHSTD IASLYYYRAL VHFHNEKIEE ARICIDKSLQ
410 420 430 440 450
LEPRRRKAVV IKECVDMYVP NPLKNNIKLY YKETESESHR VIIDNILKLK

QLTRICMR
Length:458
Mass (Da):52,753
Last modified:February 1, 1997 - v1
Checksum:iD4BA25E530585732
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28375 Genomic DNA. Translation: AAA83034.1.
U00096 Genomic DNA. Translation: AAC75891.1.
AP009048 Genomic DNA. Translation: BAE76921.1.
PIRiE65068.
RefSeqiNP_417329.1. NC_000913.3.
WP_000362702.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75891; AAC75891; b2852.
BAE76921; BAE76921; BAE76921.
GeneIDi946265.
KEGGiecj:JW2820.
eco:b2852.
PATRICi32121120. VBIEscCol129921_2949.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28375 Genomic DNA. Translation: AAA83034.1.
U00096 Genomic DNA. Translation: AAC75891.1.
AP009048 Genomic DNA. Translation: BAE76921.1.
PIRiE65068.
RefSeqiNP_417329.1. NC_000913.3.
WP_000362702.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76639.
SMRiP76639.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261612. 15 interactors.
IntActiP76639. 2 interactors.
STRINGi511145.b2852.

Proteomic databases

PaxDbiP76639.
PRIDEiP76639.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75891; AAC75891; b2852.
BAE76921; BAE76921; BAE76921.
GeneIDi946265.
KEGGiecj:JW2820.
eco:b2852.
PATRICi32121120. VBIEscCol129921_2949.

Organism-specific databases

EchoBASEiEB2853.
EcoGeneiEG13038. ygeH.

Phylogenomic databases

eggNOGiENOG4108YAB. Bacteria.
COG0457. LUCA.
COG3710. LUCA.
HOGENOMiHOG000009549.
OMAiNFHNERI.

Enzyme and pathway databases

BioCyciEcoCyc:G7472-MONOMER.
ECOL316407:JW2820-MONOMER.

Miscellaneous databases

PROiP76639.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
1.25.40.10. 2 hits.
InterProiIPR001867. OmpR/PhoB-type_DNA-bd.
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR013026. TPR-contain_dom.
IPR011990. TPR-like_helical_dom.
IPR019734. TPR_repeat.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00486. Trans_reg_C. 1 hit.
[Graphical view]
SMARTiSM00028. TPR. 1 hit.
SM00862. Trans_reg_C. 1 hit.
[Graphical view]
SUPFAMiSSF46894. SSF46894. 1 hit.
SSF48452. SSF48452. 1 hit.
PROSITEiPS51755. OMPR_PHOB. 1 hit.
PS50005. TPR. 1 hit.
PS50293. TPR_REGION. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYGEH_ECOLI
AccessioniPrimary (citable) accession number: P76639
Secondary accession number(s): Q2M9Y5, Q46788
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 120 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.