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Protein

Uncharacterized protein YphH

Gene

yphH

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7344-MONOMER.
ECOL316407:JW5406-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YphH
Gene namesi
Name:yphH
Ordered Locus Names:b2550, JW5406
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13469. yphH.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 397397Uncharacterized protein YphHPRO_0000095721Add
BLAST

Proteomic databases

PaxDbiP76586.

Interactioni

Protein-protein interaction databases

BioGridi4261312. 15 interactions.
DIPiDIP-12833N.
IntActiP76586. 1 interaction.
MINTiMINT-1238797.
STRINGi511145.b2550.

Structurei

3D structure databases

ProteinModelPortaliP76586.
SMRiP76586. Positions 9-391.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ROK (NagC/XylR) family.Curated

Phylogenomic databases

eggNOGiENOG4108NZE. Bacteria.
COG1940. LUCA.
HOGENOMiHOG000123503.
OMAiSHLWREK.
OrthoDBiEOG622PS4.
PhylomeDBiP76586.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR000600. ROK.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00480. ROK. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.

Sequencei

Sequence statusi: Complete.

P76586-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRACINNQQI RHHNKCVILE LLYRQKRANK STLARLAQIS IPAVSNILQE
60 70 80 90 100
LESEKRVVNI DDESQTRGHS SGTWLIAPEG DWTLCLNVTP TSIECQVANA
110 120 130 140 150
CLSPKGEFEY LQIDAPTPQA LLSEIEKCWH RHRKLWPDHT INLALAIHGQ
160 170 180 190 200
VDPVTGVSQT MPQAPWTTPV EVKYLLEEKL GIRVMVDNDC VMLALAEKWQ
210 220 230 240 250
NNSQERDFCV INVDYGIGSS FVINEQIYRG SLYGSGQIGH TIVNPDGVVC
260 270 280 290 300
DCGRYGCLET VASLSALKKQ ARVWLKSQPV STQLDPEKLT TAQLIAAWQS
310 320 330 340 350
GEPWITSWVD RSANAIGLSL YNFLNILNIN QIWLYGRSCA FGENWLNTII
360 370 380 390
RQTGFNPFDR DEGPSVKATQ IGFGQLSRAQ QVLGIGYLYV EAQLRQI
Length:397
Mass (Da):44,521
Last modified:May 30, 2000 - v2
Checksum:i718CF50C88DB6190
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75603.2.
AP009048 Genomic DNA. Translation: BAA16458.2.
PIRiE65032.
RefSeqiNP_417045.4. NC_000913.3.
WP_001200769.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75603; AAC75603; b2550.
BAA16458; BAA16458; BAA16458.
GeneIDi947023.
KEGGiecj:JW5406.
eco:b2550.
PATRICi32120497. VBIEscCol129921_2651.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75603.2.
AP009048 Genomic DNA. Translation: BAA16458.2.
PIRiE65032.
RefSeqiNP_417045.4. NC_000913.3.
WP_001200769.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76586.
SMRiP76586. Positions 9-391.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261312. 15 interactions.
DIPiDIP-12833N.
IntActiP76586. 1 interaction.
MINTiMINT-1238797.
STRINGi511145.b2550.

Proteomic databases

PaxDbiP76586.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75603; AAC75603; b2550.
BAA16458; BAA16458; BAA16458.
GeneIDi947023.
KEGGiecj:JW5406.
eco:b2550.
PATRICi32120497. VBIEscCol129921_2651.

Organism-specific databases

EchoBASEiEB3242.
EcoGeneiEG13469. yphH.

Phylogenomic databases

eggNOGiENOG4108NZE. Bacteria.
COG1940. LUCA.
HOGENOMiHOG000123503.
OMAiSHLWREK.
OrthoDBiEOG622PS4.
PhylomeDBiP76586.

Enzyme and pathway databases

BioCyciEcoCyc:G7344-MONOMER.
ECOL316407:JW5406-MONOMER.

Miscellaneous databases

PROiP76586.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR000600. ROK.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00480. ROK. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Construction of a contiguous 874-kb sequence of the Escherichia coli-K12 genome corresponding to 50.0-68.8 min on the linkage map and analysis of its sequence features."
    Yamamoto Y., Aiba H., Baba T., Hayashi K., Inada T., Isono K., Itoh T., Kimura S., Kitagawa M., Makino K., Miki T., Mitsuhashi N., Mizobuchi K., Mori H., Nakade S., Nakamura Y., Nashimoto H., Oshima T.
    , Oyama S., Saito N., Sampei G., Satoh Y., Sivasundaram S., Tagami H., Takahashi H., Takeda J., Takemoto K., Uehara K., Wada C., Yamagata S., Horiuchi T.
    DNA Res. 4:91-113(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], SEQUENCE REVISION.
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYPHH_ECOLI
AccessioniPrimary (citable) accession number: P76586
Secondary accession number(s): P76996
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: May 30, 2000
Last modified: January 20, 2016
This is version 105 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.