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Protein

Uncharacterized protein YphB

Gene

yphB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • carbohydrate metabolic process Source: InterPro
  • cellular response to DNA damage stimulus Source: EcoliWiki
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G7338-MONOMER.
ECOL316407:JW2528-MONOMER.
RETL1328306-WGS:GSTH-3767-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YphB
Gene namesi
Name:yphB
Ordered Locus Names:b2544, JW2528
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13463. yphB.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 290290Uncharacterized protein YphBPRO_0000169259Add
BLAST

Proteomic databases

PaxDbiP76584.
PRIDEiP76584.

Interactioni

Protein-protein interaction databases

BioGridi4260692. 7 interactions.
IntActiP76584. 3 interactions.
STRINGi511145.b2544.

Structurei

Secondary structure

1
290
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi3 – 86Combined sources
Beta strandi11 – 166Combined sources
Beta strandi21 – 277Combined sources
Beta strandi30 – 334Combined sources
Helixi42 – 443Combined sources
Beta strandi45 – 528Combined sources
Helixi58 – 603Combined sources
Beta strandi61 – 644Combined sources
Beta strandi67 – 704Combined sources
Beta strandi82 – 854Combined sources
Helixi86 – 883Combined sources
Beta strandi92 – 965Combined sources
Beta strandi98 – 11114Combined sources
Beta strandi113 – 12210Combined sources
Beta strandi124 – 13512Combined sources
Beta strandi137 – 1393Combined sources
Beta strandi141 – 1433Combined sources
Beta strandi146 – 1527Combined sources
Beta strandi158 – 1614Combined sources
Beta strandi164 – 1696Combined sources
Helixi171 – 1733Combined sources
Beta strandi175 – 1817Combined sources
Helixi184 – 1863Combined sources
Beta strandi199 – 2057Combined sources
Beta strandi208 – 2147Combined sources
Helixi215 – 2173Combined sources
Beta strandi219 – 2279Combined sources
Beta strandi230 – 2367Combined sources
Turni239 – 2413Combined sources
Beta strandi249 – 2579Combined sources
Helixi261 – 2633Combined sources
Helixi265 – 2673Combined sources
Beta strandi271 – 2733Combined sources
Beta strandi278 – 28912Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3NREX-ray1.59A/B/C/D1-290[»]
ProteinModelPortaliP76584.
SMRiP76584. Positions 1-290.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4108ZKT. Bacteria.
COG2017. LUCA.
HOGENOMiHOG000256089.
InParanoidiP76584.
OMAiPIHGSAW.
PhylomeDBiP76584.

Family and domain databases

Gene3Di2.70.98.10. 1 hit.
InterProiIPR008183. Aldose_1/G6P_1-epimerase.
IPR011013. Gal_mutarotase_SF_dom.
IPR014718. GH-type_carb-bd.
[Graphical view]
PfamiPF01263. Aldose_epim. 1 hit.
[Graphical view]
SUPFAMiSSF74650. SSF74650. 1 hit.

Sequencei

Sequence statusi: Complete.

P76584-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTIYTLSHGS LKLDVSDQGG VIEGFWRDTT PLLRPGKKSG VATDASCFPL
60 70 80 90 100
VPFANRVSGN RFVWQGREYQ LQPNVEWDAH YLHGDGWLGE WQCVSHSDDS
110 120 130 140 150
LCLVYEHRSG VYHYRVSQAF HLTADTLTVT LSVTNQGAET LPFGTGWHPY
160 170 180 190 200
FPLSPQTRIQ AQASGYWLER EQWLAGEFCE QLPQELDFNQ PAPLPRQWVN
210 220 230 240 250
NGFAGWNGQA RIEQPQEGYA IIMETTPPAP CYFIFVSDPA FDKGYAFDFF
260 270 280 290
CLEPMSHAPD DHHRPEGGDL IALAPGESTT SEMSLRVEWL
Length:290
Mass (Da):32,716
Last modified:February 1, 1997 - v1
Checksum:i818406C73ED4B649
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75597.1.
AP009048 Genomic DNA. Translation: BAE76730.1.
PIRiG65031.
RefSeqiNP_417039.1. NC_000913.3.
WP_000158547.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75597; AAC75597; b2544.
BAE76730; BAE76730; BAE76730.
GeneIDi947017.
KEGGiecj:JW2528.
eco:b2544.
PATRICi32120485. VBIEscCol129921_2645.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75597.1.
AP009048 Genomic DNA. Translation: BAE76730.1.
PIRiG65031.
RefSeqiNP_417039.1. NC_000913.3.
WP_000158547.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3NREX-ray1.59A/B/C/D1-290[»]
ProteinModelPortaliP76584.
SMRiP76584. Positions 1-290.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260692. 7 interactions.
IntActiP76584. 3 interactions.
STRINGi511145.b2544.

Proteomic databases

PaxDbiP76584.
PRIDEiP76584.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75597; AAC75597; b2544.
BAE76730; BAE76730; BAE76730.
GeneIDi947017.
KEGGiecj:JW2528.
eco:b2544.
PATRICi32120485. VBIEscCol129921_2645.

Organism-specific databases

EchoBASEiEB3236.
EcoGeneiEG13463. yphB.

Phylogenomic databases

eggNOGiENOG4108ZKT. Bacteria.
COG2017. LUCA.
HOGENOMiHOG000256089.
InParanoidiP76584.
OMAiPIHGSAW.
PhylomeDBiP76584.

Enzyme and pathway databases

BioCyciEcoCyc:G7338-MONOMER.
ECOL316407:JW2528-MONOMER.
RETL1328306-WGS:GSTH-3767-MONOMER.

Miscellaneous databases

PROiP76584.

Family and domain databases

Gene3Di2.70.98.10. 1 hit.
InterProiIPR008183. Aldose_1/G6P_1-epimerase.
IPR011013. Gal_mutarotase_SF_dom.
IPR014718. GH-type_carb-bd.
[Graphical view]
PfamiPF01263. Aldose_epim. 1 hit.
[Graphical view]
SUPFAMiSSF74650. SSF74650. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYPHB_ECOLI
AccessioniPrimary (citable) accession number: P76584
Secondary accession number(s): Q2MAH6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: September 7, 2016
This is version 105 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.