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Protein

Uncharacterized protein YphB

Gene

yphB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G7338-MONOMER.
ECOL316407:JW2528-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YphB
Gene namesi
Name:yphB
Ordered Locus Names:b2544, JW2528
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13463. yphB.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001692591 – 290Uncharacterized protein YphBAdd BLAST290

Proteomic databases

PaxDbiP76584.
PRIDEiP76584.

Interactioni

Protein-protein interaction databases

BioGridi4260692. 7 interactors.
IntActiP76584. 3 interactors.
STRINGi511145.b2544.

Structurei

Secondary structure

1290
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi3 – 8Combined sources6
Beta strandi11 – 16Combined sources6
Beta strandi21 – 27Combined sources7
Beta strandi30 – 33Combined sources4
Helixi42 – 44Combined sources3
Beta strandi45 – 52Combined sources8
Helixi58 – 60Combined sources3
Beta strandi61 – 64Combined sources4
Beta strandi67 – 70Combined sources4
Beta strandi82 – 85Combined sources4
Helixi86 – 88Combined sources3
Beta strandi92 – 96Combined sources5
Beta strandi98 – 111Combined sources14
Beta strandi113 – 122Combined sources10
Beta strandi124 – 135Combined sources12
Beta strandi137 – 139Combined sources3
Beta strandi141 – 143Combined sources3
Beta strandi146 – 152Combined sources7
Beta strandi158 – 161Combined sources4
Beta strandi164 – 169Combined sources6
Helixi171 – 173Combined sources3
Beta strandi175 – 181Combined sources7
Helixi184 – 186Combined sources3
Beta strandi199 – 205Combined sources7
Beta strandi208 – 214Combined sources7
Helixi215 – 217Combined sources3
Beta strandi219 – 227Combined sources9
Beta strandi230 – 236Combined sources7
Turni239 – 241Combined sources3
Beta strandi249 – 257Combined sources9
Helixi261 – 263Combined sources3
Helixi265 – 267Combined sources3
Beta strandi271 – 273Combined sources3
Beta strandi278 – 289Combined sources12

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3NREX-ray1.59A/B/C/D1-290[»]
ProteinModelPortaliP76584.
SMRiP76584.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4108ZKT. Bacteria.
COG2017. LUCA.
HOGENOMiHOG000256089.
InParanoidiP76584.
OMAiPIHGSAW.
PhylomeDBiP76584.

Family and domain databases

Gene3Di2.70.98.10. 1 hit.
InterProiIPR008183. Aldose_1/G6P_1-epimerase.
IPR011013. Gal_mutarotase_SF_dom.
IPR014718. GH-type_carb-bd.
[Graphical view]
PfamiPF01263. Aldose_epim. 1 hit.
[Graphical view]
SUPFAMiSSF74650. SSF74650. 1 hit.

Sequencei

Sequence statusi: Complete.

P76584-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTIYTLSHGS LKLDVSDQGG VIEGFWRDTT PLLRPGKKSG VATDASCFPL
60 70 80 90 100
VPFANRVSGN RFVWQGREYQ LQPNVEWDAH YLHGDGWLGE WQCVSHSDDS
110 120 130 140 150
LCLVYEHRSG VYHYRVSQAF HLTADTLTVT LSVTNQGAET LPFGTGWHPY
160 170 180 190 200
FPLSPQTRIQ AQASGYWLER EQWLAGEFCE QLPQELDFNQ PAPLPRQWVN
210 220 230 240 250
NGFAGWNGQA RIEQPQEGYA IIMETTPPAP CYFIFVSDPA FDKGYAFDFF
260 270 280 290
CLEPMSHAPD DHHRPEGGDL IALAPGESTT SEMSLRVEWL
Length:290
Mass (Da):32,716
Last modified:February 1, 1997 - v1
Checksum:i818406C73ED4B649
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75597.1.
AP009048 Genomic DNA. Translation: BAE76730.1.
PIRiG65031.
RefSeqiNP_417039.1. NC_000913.3.
WP_000158547.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75597; AAC75597; b2544.
BAE76730; BAE76730; BAE76730.
GeneIDi947017.
KEGGiecj:JW2528.
eco:b2544.
PATRICi32120485. VBIEscCol129921_2645.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75597.1.
AP009048 Genomic DNA. Translation: BAE76730.1.
PIRiG65031.
RefSeqiNP_417039.1. NC_000913.3.
WP_000158547.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3NREX-ray1.59A/B/C/D1-290[»]
ProteinModelPortaliP76584.
SMRiP76584.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260692. 7 interactors.
IntActiP76584. 3 interactors.
STRINGi511145.b2544.

Proteomic databases

PaxDbiP76584.
PRIDEiP76584.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75597; AAC75597; b2544.
BAE76730; BAE76730; BAE76730.
GeneIDi947017.
KEGGiecj:JW2528.
eco:b2544.
PATRICi32120485. VBIEscCol129921_2645.

Organism-specific databases

EchoBASEiEB3236.
EcoGeneiEG13463. yphB.

Phylogenomic databases

eggNOGiENOG4108ZKT. Bacteria.
COG2017. LUCA.
HOGENOMiHOG000256089.
InParanoidiP76584.
OMAiPIHGSAW.
PhylomeDBiP76584.

Enzyme and pathway databases

BioCyciEcoCyc:G7338-MONOMER.
ECOL316407:JW2528-MONOMER.

Miscellaneous databases

PROiP76584.

Family and domain databases

Gene3Di2.70.98.10. 1 hit.
InterProiIPR008183. Aldose_1/G6P_1-epimerase.
IPR011013. Gal_mutarotase_SF_dom.
IPR014718. GH-type_carb-bd.
[Graphical view]
PfamiPF01263. Aldose_epim. 1 hit.
[Graphical view]
SUPFAMiSSF74650. SSF74650. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYPHB_ECOLI
AccessioniPrimary (citable) accession number: P76584
Secondary accession number(s): Q2MAH6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.