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Protein

UPF0070 protein YfgM

Gene

yfgM

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  • protein complex binding Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G7321-MONOMER.
ECOL316407:JW2497-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0070 protein YfgM
Gene namesi
Name:yfgM
Ordered Locus Names:b2513, JW2497
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14209. yfgM.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei24 – 42HelicalSequence analysisAdd BLAST19

GO - Cellular componenti

  • integral component of external side of plasma membrane Source: EcoCyc
  • protein complex Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002143641 – 206UPF0070 protein YfgMAdd BLAST206

Proteomic databases

EPDiP76576.
PaxDbiP76576.
PRIDEiP76576.

Interactioni

GO - Molecular functioni

  • protein complex binding Source: EcoCyc

Protein-protein interaction databases

BioGridi4260588. 4 interactors.
DIPiDIP-12043N.
IntActiP76576. 5 interactors.
STRINGi511145.b2513.

Structurei

3D structure databases

ProteinModelPortaliP76576.
SMRiP76576.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0070 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105N21. Bacteria.
COG2976. LUCA.
HOGENOMiHOG000261006.
InParanoidiP76576.
OMAiVGWRFWQ.

Family and domain databases

Gene3Di1.25.40.10. 1 hit.
InterProiIPR011990. TPR-like_helical_dom.
IPR018704. TPR_21.
IPR026039. UPF0070.
[Graphical view]
PfamiPF09976. TPR_21. 1 hit.
[Graphical view]
PIRSFiPIRSF006170. YfgM. 1 hit.
SUPFAMiSSF48452. SSF48452. 1 hit.

Sequencei

Sequence statusi: Complete.

P76576-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEIYENENDQ VEAVKRFFAE NGKALAVGVI LGVGALIGWR YWNSHQVDSA
60 70 80 90 100
RSASLAYQNA VTAVSEGKPD SIPAAEKFAA ENKNTYGALA SLELAQQFVD
110 120 130 140 150
KNELEKAAAQ LQQGLADTSD ENLKAVINLR LARVQVQLKQ ADAALKTLDT
160 170 180 190 200
IKGEGWAAIV ADLRGEALLS KGDKQGARSA WEAGVKSDVT PALSEMMQMK

INNLSI
Length:206
Mass (Da):22,176
Last modified:February 1, 1997 - v1
Checksum:i2DAFC595EBDC5EEB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75566.1.
AP009048 Genomic DNA. Translation: BAA16399.2.
PIRiH65027.
RefSeqiNP_417008.1. NC_000913.3.
WP_000409205.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75566; AAC75566; b2513.
BAA16399; BAA16399; BAA16399.
GeneIDi946981.
KEGGiecj:JW2497.
eco:b2513.
PATRICi32120419. VBIEscCol129921_2612.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75566.1.
AP009048 Genomic DNA. Translation: BAA16399.2.
PIRiH65027.
RefSeqiNP_417008.1. NC_000913.3.
WP_000409205.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76576.
SMRiP76576.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260588. 4 interactors.
DIPiDIP-12043N.
IntActiP76576. 5 interactors.
STRINGi511145.b2513.

Proteomic databases

EPDiP76576.
PaxDbiP76576.
PRIDEiP76576.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75566; AAC75566; b2513.
BAA16399; BAA16399; BAA16399.
GeneIDi946981.
KEGGiecj:JW2497.
eco:b2513.
PATRICi32120419. VBIEscCol129921_2612.

Organism-specific databases

EchoBASEiEB3961.
EcoGeneiEG14209. yfgM.

Phylogenomic databases

eggNOGiENOG4105N21. Bacteria.
COG2976. LUCA.
HOGENOMiHOG000261006.
InParanoidiP76576.
OMAiVGWRFWQ.

Enzyme and pathway databases

BioCyciEcoCyc:G7321-MONOMER.
ECOL316407:JW2497-MONOMER.

Miscellaneous databases

PROiP76576.

Family and domain databases

Gene3Di1.25.40.10. 1 hit.
InterProiIPR011990. TPR-like_helical_dom.
IPR018704. TPR_21.
IPR026039. UPF0070.
[Graphical view]
PfamiPF09976. TPR_21. 1 hit.
[Graphical view]
PIRSFiPIRSF006170. YfgM. 1 hit.
SUPFAMiSSF48452. SSF48452. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYFGM_ECOLI
AccessioniPrimary (citable) accession number: P76576
Secondary accession number(s): P76982, P76983
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 113 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.