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Protein

Uncharacterized protein YfdY

Gene

yfdY

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7240-MONOMER.
ECOL316407:JW2374-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YfdY
Gene namesi
Name:yfdY
Ordered Locus Names:b2377, JW2374
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14147. yfdY.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei2 – 2221HelicalSequence analysisAdd
BLAST
Transmembranei32 – 5221HelicalSequence analysisAdd
BLAST
Transmembranei55 – 7521HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 8080Uncharacterized protein YfdYPRO_0000169215Add
BLAST

Proteomic databases

PaxDbiP76521.

Interactioni

Protein-protein interaction databases

BioGridi4260895. 10 interactions.

Structurei

3D structure databases

ProteinModelPortaliP76521.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105W9M. Bacteria.
ENOG4112AZ4. LUCA.
HOGENOMiHOG000009522.
OMAiVSCYIGQ.
OrthoDBiEOG6QG8NZ.

Family and domain databases

InterProiIPR024470. DUF2545.
[Graphical view]
PfamiPF10810. DUF2545. 1 hit.
[Graphical view]
ProDomiPD857460. PD857460. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

P76521-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MINLWMFLAL CIVCVSGYIG QVLNVVSAVS SFFGMVILAA LIYYFTMWLT
60 70 80
GGNELVTGIF MFLAPACGLM IRFMVGYGRR
Length:80
Mass (Da):8,874
Last modified:February 1, 1997 - v1
Checksum:iFB4195B33345DA5C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75436.1.
AP009048 Genomic DNA. Translation: BAE76707.1.
PIRiF65011.
RefSeqiNP_416878.1. NC_000913.3.
WP_000609275.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75436; AAC75436; b2377.
BAE76707; BAE76707; BAE76707.
GeneIDi948842.
KEGGiecj:JW2374.
eco:b2377.
PATRICi32120131. VBIEscCol129921_2474.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75436.1.
AP009048 Genomic DNA. Translation: BAE76707.1.
PIRiF65011.
RefSeqiNP_416878.1. NC_000913.3.
WP_000609275.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76521.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260895. 10 interactions.

Proteomic databases

PaxDbiP76521.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75436; AAC75436; b2377.
BAE76707; BAE76707; BAE76707.
GeneIDi948842.
KEGGiecj:JW2374.
eco:b2377.
PATRICi32120131. VBIEscCol129921_2474.

Organism-specific databases

EchoBASEiEB3899.
EcoGeneiEG14147. yfdY.

Phylogenomic databases

eggNOGiENOG4105W9M. Bacteria.
ENOG4112AZ4. LUCA.
HOGENOMiHOG000009522.
OMAiVSCYIGQ.
OrthoDBiEOG6QG8NZ.

Enzyme and pathway databases

BioCyciEcoCyc:G7240-MONOMER.
ECOL316407:JW2374-MONOMER.

Miscellaneous databases

PROiP76521.

Family and domain databases

InterProiIPR024470. DUF2545.
[Graphical view]
PfamiPF10810. DUF2545. 1 hit.
[Graphical view]
ProDomiPD857460. PD857460. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYFDY_ECOLI
AccessioniPrimary (citable) accession number: P76521
Secondary accession number(s): Q2MAJ9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: February 1, 1997
Last modified: January 20, 2016
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.