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Protein

Putative uncharacterized protein YfdM

Gene

yfdM

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein uncertaini

Functioni

GO - Molecular functioni

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G7225-MONOMER.
ECOL316407:JW2352-MONOMER.

Protein family/group databases

REBASEi20309. M.EcoW3110ORF2350P.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative uncharacterized protein YfdM
Gene namesi
Name:yfdM
Ordered Locus Names:b2356, JW2352
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000000318 Componenti: Chromosome UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12950. yfdM.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 9191Putative uncharacterized protein YfdMPRO_0000169205Add
BLAST

Interactioni

Protein-protein interaction databases

IntActiP76509. 1 interaction.
STRINGi316407.85675370.

Structurei

3D structure databases

ProteinModelPortaliP76509.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Family and domain databases

InterProiIPR008593. Dam_MeTrfase.
[Graphical view]
PfamiPF05869. Dam. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01712. phage_N6A_met. 1 hit.
PROSITEiPS00092. N6_MTASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P76509-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSNKYCQALV ELRNKPAHEL KEVGDQWRTP DNIFWGINTL FGPFVLDLFT
60 70 80 90
DGDNAKCAAY YTAEDNALAH DWSERLAELK GAAFGNPPYP W
Length:91
Mass (Da):10,336
Last modified:November 1, 1997 - v2
Checksum:i19890305A69C014B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAE76696.1.
X04387 Genomic DNA. No translation available.
PIRiA65009.
RefSeqiWP_000066913.1. NZ_CP010445.1.

Genome annotation databases

EnsemblBacteriaiBAE76696; BAE76696; BAE76696.
PATRICi48664114. VBIEscCol107702_2397.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAE76696.1.
X04387 Genomic DNA. No translation available.
PIRiA65009.
RefSeqiWP_000066913.1. NZ_CP010445.1.

3D structure databases

ProteinModelPortaliP76509.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP76509. 1 interaction.
STRINGi316407.85675370.

Protein family/group databases

REBASEi20309. M.EcoW3110ORF2350P.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAE76696; BAE76696; BAE76696.
PATRICi48664114. VBIEscCol107702_2397.

Organism-specific databases

EchoBASEiEB2784.
EcoGeneiEG12950. yfdM.

Enzyme and pathway databases

BioCyciEcoCyc:G7225-MONOMER.
ECOL316407:JW2352-MONOMER.

Family and domain databases

InterProiIPR008593. Dam_MeTrfase.
[Graphical view]
PfamiPF05869. Dam. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01712. phage_N6A_met. 1 hit.
PROSITEiPS00092. N6_MTASE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. "Nucleotide sequence of the gene responsible for D-xylose uptake in Escherichia coli."
    Kurose N., Watanabe K., Kimura A.
    Nucleic Acids Res. 14:7115-7123(1986) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-25.

Entry informationi

Entry nameiYFDM_ECOLI
AccessioniPrimary (citable) accession number: P76509
Secondary accession number(s): Q2MAL0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: July 22, 2015
This is version 87 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Could be the product of a pseudogene.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.