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Protein

Uncharacterized protein YfdI

Gene

yfdI

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7221-MONOMER.
ECOL316407:JW5382-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YfdI
Gene namesi
Name:yfdI
Ordered Locus Names:b2352, JW5382
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14133. yfdI.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei7 – 2923HelicalSequence analysisAdd
BLAST
Transmembranei68 – 8720HelicalSequence analysisAdd
BLAST
Transmembranei94 – 11118HelicalSequence analysisAdd
BLAST
Transmembranei121 – 14323HelicalSequence analysisAdd
BLAST
Transmembranei150 – 16415HelicalSequence analysisAdd
BLAST
Transmembranei179 – 20123HelicalSequence analysisAdd
BLAST
Transmembranei206 – 22520HelicalSequence analysisAdd
BLAST
Transmembranei358 – 37518HelicalSequence analysisAdd
BLAST
Transmembranei382 – 39918HelicalSequence analysisAdd
BLAST
Transmembranei409 – 43123HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 443443Uncharacterized protein YfdIPRO_0000169202Add
BLAST

Proteomic databases

PaxDbiP76507.

Interactioni

Protein-protein interaction databases

BioGridi4260543. 220 interactions.
STRINGi511145.b2352.

Structurei

3D structure databases

ProteinModelPortaliP76507.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

OMAiNNIYQSV.
OrthoDBiEOG6B8XDX.

Sequencei

Sequence statusi: Complete.

P76507-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNKAIKVSLY ISFVLIICAL SKNIMMLNTS DFGRAIKPLI EDIPAFTYDL
60 70 80 90 100
PLLYKLKGHI DSIDSYEYIS SYSYILYTYV LFISIFTEYL DARVLSLFLK
110 120 130 140 150
VIYIYSLYAI FTSYIKTERY VTLFTFFILA FLMCSSSTLS MFASFYQEQI
160 170 180 190 200
VIIFLPFLVY SLTCKNNKSM LLLFFSLLII STAKNQFILT PLIVYSYYIF
210 220 230 240 250
FDRHKLIIKS VICVVCLLAS IFAISYSKGV VELNKYHATY FGSYLYMKNN
260 270 280 290 300
GYKMPSYVDD KCVGLDAWGN KFDISFGATP TEVGTECFES HKDETFSNAL
310 320 330 340 350
FLLVSKPSTI FKLPFDDGVM SQYKENYFHV YKKLHVIYGE SNILTTITNI
360 370 380 390 400
KDNIFKNIRF ISLLLFFIAS IFIRNNKIKA SLFVVSLFGI SQFYVSFFGE
410 420 430 440
GYRDLSKHLF GMYFSFDLCL YITVVFLIYK IIQRNQDNSD VKH
Length:443
Mass (Da):51,484
Last modified:February 1, 1997 - v1
Checksum:i16DD959D2503908C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75411.1.
AP009048 Genomic DNA. Translation: BAE76694.1.
PIRiE65008.
RefSeqiNP_416853.1. NC_000913.3.
WP_001030215.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75411; AAC75411; b2352.
BAE76694; BAE76694; BAE76694.
GeneIDi946822.
KEGGiecj:JW5382.
eco:b2352.
PATRICi32120077. VBIEscCol129921_2447.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75411.1.
AP009048 Genomic DNA. Translation: BAE76694.1.
PIRiE65008.
RefSeqiNP_416853.1. NC_000913.3.
WP_001030215.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76507.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260543. 220 interactions.
STRINGi511145.b2352.

Proteomic databases

PaxDbiP76507.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75411; AAC75411; b2352.
BAE76694; BAE76694; BAE76694.
GeneIDi946822.
KEGGiecj:JW5382.
eco:b2352.
PATRICi32120077. VBIEscCol129921_2447.

Organism-specific databases

EchoBASEiEB3885.
EcoGeneiEG14133. yfdI.

Phylogenomic databases

OMAiNNIYQSV.
OrthoDBiEOG6B8XDX.

Enzyme and pathway databases

BioCyciEcoCyc:G7221-MONOMER.
ECOL316407:JW5382-MONOMER.

Miscellaneous databases

PROiP76507.

Family and domain databases

ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYFDI_ECOLI
AccessioniPrimary (citable) accession number: P76507
Secondary accession number(s): Q2MAL2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 1, 2001
Last sequence update: February 1, 1997
Last modified: January 20, 2016
This is version 96 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.