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Protein

Protein YfbM

Gene

yfbM

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7179-MONOMER.
ECOL316407:JW2267-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YfbM
Gene namesi
Name:yfbM
Ordered Locus Names:b2272, JW2267
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14097. yfbM.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001691801 – 167Protein YfbMAdd BLAST167

Proteomic databases

PaxDbiP76483.
PRIDEiP76483.

Interactioni

Subunit structurei

Monomer.1 Publication

Protein-protein interaction databases

BioGridi4260502. 11 interactors.
IntActiP76483. 5 interactors.
STRINGi511145.b2272.

Structurei

Secondary structure

1167
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi4 – 10Combined sources7
Helixi12 – 20Combined sources9
Helixi30 – 33Combined sources4
Beta strandi39 – 41Combined sources3
Helixi46 – 54Combined sources9
Helixi66 – 72Combined sources7
Beta strandi74 – 78Combined sources5
Beta strandi84 – 88Combined sources5
Helixi90 – 102Combined sources13
Helixi105 – 111Combined sources7
Helixi114 – 119Combined sources6
Helixi130 – 132Combined sources3
Helixi133 – 156Combined sources24
Beta strandi160 – 166Combined sources7

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1RYLX-ray1.60A/B1-167[»]
ProteinModelPortaliP76483.
SMRiP76483.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP76483.

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105GDX. Bacteria.
ENOG4111J8J. LUCA.
HOGENOMiHOG000122445.
OMAiPNIWDYE.

Family and domain databases

Gene3Di3.40.1760.10. 1 hit.
InterProiIPR015068. DUF1877.
[Graphical view]
PfamiPF08974. DUF1877. 1 hit.
[Graphical view]
SUPFAMiSSF111069. SSF111069. 1 hit.

Sequencei

Sequence statusi: Complete.

P76483-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGMIGYFAEI DSEKINQLLE STEKPLMDNI HDTLSGLRRL DIDKRWDFLH
60 70 80 90 100
FGLTGTSAFD PAKNDPLSRA VLGEHSLEDG IDGFLGLTWN QELAATIDRL
110 120 130 140 150
ESLDRNELRK QFSIKRLNEM EIYPGVTFSE ELEGQLFASI MLDMEKLISA
160
YRRMLRQGNH ALTVIVG
Length:167
Mass (Da):19,019
Last modified:February 1, 1997 - v1
Checksum:iFDF86EE5D64AA8C3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75332.1.
AP009048 Genomic DNA. Translation: BAE76680.1.
PIRiF64998.
RefSeqiNP_416775.1. NC_000913.3.
WP_000525360.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75332; AAC75332; b2272.
BAE76680; BAE76680; BAE76680.
GeneIDi946745.
KEGGiecj:JW2267.
eco:b2272.
PATRICi32119911. VBIEscCol129921_2365.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75332.1.
AP009048 Genomic DNA. Translation: BAE76680.1.
PIRiF64998.
RefSeqiNP_416775.1. NC_000913.3.
WP_000525360.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1RYLX-ray1.60A/B1-167[»]
ProteinModelPortaliP76483.
SMRiP76483.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260502. 11 interactors.
IntActiP76483. 5 interactors.
STRINGi511145.b2272.

Proteomic databases

PaxDbiP76483.
PRIDEiP76483.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75332; AAC75332; b2272.
BAE76680; BAE76680; BAE76680.
GeneIDi946745.
KEGGiecj:JW2267.
eco:b2272.
PATRICi32119911. VBIEscCol129921_2365.

Organism-specific databases

EchoBASEiEB3850.
EcoGeneiEG14097. yfbM.

Phylogenomic databases

eggNOGiENOG4105GDX. Bacteria.
ENOG4111J8J. LUCA.
HOGENOMiHOG000122445.
OMAiPNIWDYE.

Enzyme and pathway databases

BioCyciEcoCyc:G7179-MONOMER.
ECOL316407:JW2267-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP76483.
PROiP76483.

Family and domain databases

Gene3Di3.40.1760.10. 1 hit.
InterProiIPR015068. DUF1877.
[Graphical view]
PfamiPF08974. DUF1877. 1 hit.
[Graphical view]
SUPFAMiSSF111069. SSF111069. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYFBM_ECOLI
AccessioniPrimary (citable) accession number: P76483
Secondary accession number(s): Q2MAM6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 97 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.