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Protein

Cytochrome b561 homolog 1

Gene

yodB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Cofactori

heme bBy similarityNote: Binds 2 heme B (iron-protoporphyrin IX) groups per molecule.By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi12Iron (heme axial ligand)Sequence analysis1
Metal bindingi46Iron (heme axial ligand)Sequence analysis1
Metal bindingi152Iron (heme axial ligand)Sequence analysis1
Metal bindingi159Iron (heme axial ligand)Sequence analysis1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processElectron transport, Transport
LigandHeme, Iron, Metal-binding

Enzyme and pathway databases

BioCyciEcoCyc:G7062-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Cytochrome b561 homolog 1
Gene namesi
Name:yodB
Ordered Locus Names:b1974, JW5323
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14050 yodB

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 7PeriplasmicSequence analysis7
Transmembranei8 – 28HelicalSequence analysisAdd BLAST21
Topological domaini29 – 85CytoplasmicSequence analysisAdd BLAST57
Transmembranei86 – 106HelicalSequence analysisAdd BLAST21
Topological domaini107 – 141PeriplasmicSequence analysisAdd BLAST35
Transmembranei142 – 162HelicalSequence analysisAdd BLAST21
Topological domaini163 – 176CytoplasmicSequence analysisAdd BLAST14

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001999741 – 176Cytochrome b561 homolog 1Add BLAST176

Proteomic databases

PaxDbiP76345
PRIDEiP76345

Interactioni

Protein-protein interaction databases

BioGridi4260395, 6 interactors
STRINGi316385.ECDH10B_2117

Structurei

3D structure databases

ProteinModelPortaliP76345
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the cytochrome b561 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4108VKM Bacteria
COG3038 LUCA
HOGENOMiHOG000110384
InParanoidiP76345
OMAiTVFALVW
PhylomeDBiP76345

Family and domain databases

InterProiView protein in InterPro
IPR011577 Cyt_b561_bac/Ni-Hgenase
IPR016174 Di-haem_cyt_TM
PfamiView protein in Pfam
PF01292 Ni_hydr_CYTB, 1 hit
SUPFAMiSSF81342 SSF81342, 1 hit

Sequencei

Sequence statusi: Complete.

P76345-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNRFSKTQIY LHWITLLFVA ITYAAMELRG WFPKGSSTYL LMRETHYNAG
60 70 80 90 100
IFVWVLMFSR LIIKHRYSDP SIVPPPPAWQ MKAASLMHIM LYITFLALPL
110 120 130 140 150
LGIALMAYSG KSWSFLGFNV SPFVTPNSEI KALIKNIHET WANIGYFLIA
160 170
AHAGAALFHH YIQKDNTLLR MMPRRK
Length:176
Mass (Da):20,337
Last modified:November 1, 1997 - v2
Checksum:iD992943D0C3A950A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC75040.2
AP009048 Genomic DNA Translation: BAA15798.2
PIRiB64962
RefSeqiNP_416483.4, NC_000913.3
WP_001079074.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC75040; AAC75040; b1974
BAA15798; BAA15798; BAA15798
GeneIDi946491
KEGGiecj:JW5323
eco:b1974
PATRICifig|1411691.4.peg.276

Similar proteinsi

Entry informationi

Entry nameiC56H_ECOLI
AccessioniPrimary (citable) accession number: P76345
Secondary accession number(s): P94749
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: March 28, 2018
This is version 121 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

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