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Protein

Putative outer membrane protein YedS

Gene

yedS

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein uncertaini

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Porin

Keywords - Biological processi

Ion transport, Transport

Enzyme and pathway databases

BioCyciEcoCyc:G7052-MONOMER.
EcoCyc:G7053-MONOMER.
EcoCyc:G7054-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative outer membrane protein YedS
Gene namesi
Name:yedS
Ordered Locus Names:b4496, JW5319/JW1948/JW1949
ORF Names:b1964/b1965/b1966
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14042. yedS.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell outer membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 21Sequence analysisAdd BLAST21
ChainiPRO_000002525722 – 397Putative outer membrane protein YedSAdd BLAST376

Proteomic databases

PRIDEiP76335.

Interactioni

Subunit structurei

Homotrimer.By similarity

Binary interactionsi

WithEntry#Exp.IntActNotes
glcCP0ACL52EBI-1119674,EBI-1115389

Protein-protein interaction databases

IntActiP76335. 5 interactors.

Structurei

3D structure databases

ProteinModelPortaliP76335.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the Gram-negative porin family.Curated

Keywords - Domaini

Signal, Transmembrane, Transmembrane beta strand

Phylogenomic databases

HOGENOMiHOG000272406.
InParanoidiP76335.
PhylomeDBiP76335.

Family and domain databases

CDDicd00342. gram_neg_porins. 1 hit.
Gene3Di2.40.160.10. 1 hit.
InterProiIPR033900. Gram_neg_porin_domain.
IPR023614. Porin_dom.
IPR001897. Porin_gammaproteobac.
IPR001702. Porin_Gram-ve.
IPR013793. Porin_Gram-ve_CS.
[Graphical view]
PfamiPF00267. Porin_1. 1 hit.
[Graphical view]
PRINTSiPR00183. ECOLIPORIN.
PR00182. ECOLNEIPORIN.
PROSITEiPS00576. GRAM_NEG_PORIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P76335-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRKVLAMLV PALLVAGAAN AAEVYNKDGN KLDLYGKVVG LHYFSDDSGS
60 70 80 90 100
DGDMSYARIG FKGETQIADQ FTGYGQWEFN IGANGPESDK GNTATRLAFA
110 120 130 140 150
GLGFGQNGTF DYGRNYGVVY DVEAWTDMLP EFGGDTYAGA DNFMNGRANG
160 170 180 190 200
VATYRNNGFF GLVDGLNFAL QYQGNNESGG PFGQEGSGSG DGRSLSKENG
210 220 230 240 250
DGFGMSTSYD FDFGLSLGAA YXNSDRSDRQ VGVGLNDRNH SNRNAGGETA
260 270 280 290 300
EAWTVGAKYD ANNVYLAAMY AETRNMTPYG GGEFDNGESR SAIANKTQNF
310 320 330 340 350
EVVAQYQFDF GLRPSIAYLQ SKGKDLGGWA HDGNGDPRYT NKDLVKYVDI
360 370 380 390
GATYYFNKNM STYVDYKINL LDNDDDFYEA NGIATDDIVA VGLVYQF
Length:397
Mass (Da):42,985
Last modified:January 9, 2007 - v3
Checksum:i573C353A6F9D2BD7
GO

Sequence cautioni

The sequence AP009048 differs from that shown. Reason: Frameshift at several positions.Curated
The sequence AP009048 differs from that shown. Reason: Erroneous termination at position 162. Translated as Leu.Curated
The sequence U00096 differs from that shown. Reason: Frameshift at several positions.Curated
The sequence U00096 differs from that shown. Reason: Erroneous termination at position 162. Translated as Leu.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. No translation available.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. No translation available.

3D structure databases

ProteinModelPortaliP76335.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP76335. 5 interactors.

Proteomic databases

PRIDEiP76335.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

EchoBASEiEB3796.
EcoGeneiEG14042. yedS.

Phylogenomic databases

HOGENOMiHOG000272406.
InParanoidiP76335.
PhylomeDBiP76335.

Enzyme and pathway databases

BioCyciEcoCyc:G7052-MONOMER.
EcoCyc:G7053-MONOMER.
EcoCyc:G7054-MONOMER.

Family and domain databases

CDDicd00342. gram_neg_porins. 1 hit.
Gene3Di2.40.160.10. 1 hit.
InterProiIPR033900. Gram_neg_porin_domain.
IPR023614. Porin_dom.
IPR001897. Porin_gammaproteobac.
IPR001702. Porin_Gram-ve.
IPR013793. Porin_Gram-ve_CS.
[Graphical view]
PfamiPF00267. Porin_1. 1 hit.
[Graphical view]
PRINTSiPR00183. ECOLIPORIN.
PR00182. ECOLNEIPORIN.
PROSITEiPS00576. GRAM_NEG_PORIN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYEDS_ECOLI
AccessioniPrimary (citable) accession number: P76335
Secondary accession number(s): O07986
, P76336, P76337, P94747, P94748
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: January 9, 2007
Last modified: November 30, 2016
This is version 113 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Could be the product of a pseudogene.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.