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Protein

Putative outer membrane protein YedS

Gene

yedS

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein uncertaini

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionPorin
Biological processIon transport, Transport

Enzyme and pathway databases

BioCyciEcoCyc:G7052-MONOMER.
EcoCyc:G7053-MONOMER.
EcoCyc:G7054-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative outer membrane protein YedS
Gene namesi
Name:yedS
Ordered Locus Names:b4496, JW5319/JW1948/JW1949
ORF Names:b1964/b1965/b1966
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14042. yedS.

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Cell outer membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 21Sequence analysisAdd BLAST21
ChainiPRO_000002525722 – 161Putative outer membrane protein YedSAdd BLAST140

Proteomic databases

PRIDEiP76335.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
glcCP0ACL52EBI-1119674,EBI-1115389

Protein-protein interaction databases

IntActiP76335. 5 interactors.

Structurei

3D structure databases

ProteinModelPortaliP76335.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the Gram-negative porin family.Curated

Keywords - Domaini

Signal, Transmembrane, Transmembrane beta strand

Phylogenomic databases

HOGENOMiHOG000272406.
InParanoidiP76335.
PhylomeDBiP76335.

Family and domain databases

CDDicd00342. gram_neg_porins. 1 hit.
InterProiView protein in InterPro
IPR033900. Gram_neg_porin_domain.
IPR001897. Porin_gammaproteobac.
IPR001702. Porin_Gram-ve.
PfamiView protein in Pfam
PF00267. Porin_1. 1 hit.
PRINTSiPR00183. ECOLIPORIN.
PR00182. ECOLNEIPORIN.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P76335-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRKVLAMLV PALLVAGAAN AAEVYNKDGN KLDLYGKVVG LHYFSDDSGS
60 70 80 90 100
DGDMSYARIG FKGETQIADQ FTGYGQWEFN IGANGPESDK GNTATRLAFA
110 120 130 140 150
GLGFGQNGTF DYGRNYGVVY DVEAWTDMLP EFGGDTYAGA DNFMNGRANG
160
VATYRNNGFF G
Length:161
Mass (Da):17,296
Last modified:September 27, 2017 - v4
Checksum:i80A2E1FF12D8ECE6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. No translation available.

Similar proteinsi

Entry informationi

Entry nameiYEDS_ECOLI
AccessioniPrimary (citable) accession number: P76335
Secondary accession number(s): O07986
, P76336, P76337, P94747, P94748
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: September 27, 2017
Last modified: October 25, 2017
This is version 116 of the entry and version 4 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Could be the product of a pseudogene, it is missing the C-terminus compared to orthologs. An example of a full-length E.coli protein is (AC J9RX10).Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families