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Protein

Inner membrane protein YedR

Gene

yedR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7051-MONOMER.
ECOL316407:JW1946-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YedR
Gene namesi
Name:yedR
Ordered Locus Names:b1963, JW1946
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14041. yedR.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 3737CytoplasmicSequence analysisAdd
BLAST
Transmembranei38 – 5821HelicalSequence analysisAdd
BLAST
Topological domaini59 – 8527PeriplasmicSequence analysisAdd
BLAST
Transmembranei86 – 10621HelicalSequence analysisAdd
BLAST
Topological domaini107 – 12115CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 121121Inner membrane protein YedRPRO_0000169101Add
BLAST

Proteomic databases

PaxDbiP76334.

Interactioni

Protein-protein interaction databases

BioGridi4260864. 148 interactions.
DIPiDIP-11849N.
IntActiP76334. 1 interaction.
STRINGi511145.b1963.

Structurei

3D structure databases

ProteinModelPortaliP76334.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105Y0K. Bacteria.
ENOG411246N. LUCA.
HOGENOMiHOG000121354.
OMAiFYAFCGY.

Sequencei

Sequence statusi: Complete.

P76334-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEKCDFYHII VLSLNFPGYL KMEYGSTKME ERLSRSPGGK LALWAFYTWC
60 70 80 90 100
GYFVWAMARY IWVMSRIPDA PVSGFESDLG STAGKWLGAL VGFLFMALVG
110 120
ALLGSIAWYT RPRPARSRRY E
Length:121
Mass (Da):13,838
Last modified:December 1, 2000 - v2
Checksum:i30619D75B31A1E70
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75029.2.
AP009048 Genomic DNA. Translation: BAE76557.1.
PIRiG64960.
RefSeqiNP_416472.2. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiAAC75029; AAC75029; b1963.
BAE76557; BAE76557; BAE76557.
GeneIDi946477.
KEGGiecj:JW1946.
eco:b1963.
PATRICi32119255. VBIEscCol129921_2042.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75029.2.
AP009048 Genomic DNA. Translation: BAE76557.1.
PIRiG64960.
RefSeqiNP_416472.2. NC_000913.3.

3D structure databases

ProteinModelPortaliP76334.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260864. 148 interactions.
DIPiDIP-11849N.
IntActiP76334. 1 interaction.
STRINGi511145.b1963.

Proteomic databases

PaxDbiP76334.

Protocols and materials databases

DNASUi946477.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75029; AAC75029; b1963.
BAE76557; BAE76557; BAE76557.
GeneIDi946477.
KEGGiecj:JW1946.
eco:b1963.
PATRICi32119255. VBIEscCol129921_2042.

Organism-specific databases

EchoBASEiEB3795.
EcoGeneiEG14041. yedR.

Phylogenomic databases

eggNOGiENOG4105Y0K. Bacteria.
ENOG411246N. LUCA.
HOGENOMiHOG000121354.
OMAiFYAFCGY.

Enzyme and pathway databases

BioCyciEcoCyc:G7051-MONOMER.
ECOL316407:JW1946-MONOMER.

Miscellaneous databases

PROiP76334.

Family and domain databases

ProtoNetiSearch...

Entry informationi

Entry nameiYEDR_ECOLI
AccessioniPrimary (citable) accession number: P76334
Secondary accession number(s): Q2MAZ9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: December 1, 2000
Last modified: September 7, 2016
This is version 97 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.