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Protein

Putative SOS response-associated peptidase YedK

Gene

yedK

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionHydrolase, Protease

Enzyme and pathway databases

BioCyciEcoCyc:EG11662-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Putative SOS response-associated peptidase YedK (EC:3.4.-.-)
Gene namesi
Name:yedK
Synonyms:yedG
Ordered Locus Names:b1931, JW1916
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13278 yedK

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001690941 – 222Putative SOS response-associated peptidase YedKAdd BLAST222

Proteomic databases

PaxDbiP76318
PRIDEiP76318

Interactioni

Protein-protein interaction databases

BioGridi4261039, 9 interactors
IntActiP76318, 14 interactors
STRINGi316385.ECDH10B_2072

Structurei

Secondary structure

1222
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi5 – 7Combined sources3
Helixi11 – 15Combined sources5
Turni16 – 18Combined sources3
Helixi21 – 23Combined sources3
Beta strandi35 – 38Combined sources4
Beta strandi42 – 50Combined sources9
Beta strandi53 – 61Combined sources9
Beta strandi75 – 77Combined sources3
Helixi78 – 81Combined sources4
Turni85 – 87Combined sources3
Helixi88 – 93Combined sources6
Beta strandi95 – 106Combined sources12
Beta strandi115 – 120Combined sources6
Beta strandi126 – 132Combined sources7
Helixi136 – 138Combined sources3
Beta strandi141 – 143Combined sources3
Beta strandi145 – 151Combined sources7
Helixi154 – 158Combined sources5
Beta strandi161 – 164Combined sources4
Helixi169 – 176Combined sources8
Helixi182 – 192Combined sources11
Helixi196 – 198Combined sources3
Beta strandi199 – 203Combined sources5
Helixi206 – 209Combined sources4
Helixi216 – 219Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2ICUX-ray1.60A/B1-222[»]
ProteinModelPortaliP76318
SMRiP76318
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP76318

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4108RAV Bacteria
COG2135 LUCA
HOGENOMiHOG000104694
InParanoidiP76318
OMAiCGRYATT
PhylomeDBiP76318

Family and domain databases

Gene3Di3.90.1680.10, 1 hit
InterProiView protein in InterPro
IPR003738 SRAP
IPR036590 SRAP-like
PANTHERiPTHR13604 PTHR13604, 1 hit
PfamiView protein in Pfam
PF02586 SRAP, 1 hit
SUPFAMiSSF143081 SSF143081, 1 hit

Sequencei

Sequence statusi: Complete.

P76318-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MCGRFAQSQT REDYLALLAE DIERDIPYDP EPIGRYNVAP GTKVLLLSER
60 70 80 90 100
DEHLHLDPVF WGYAPGWWDK PPLINARVET AATSRMFKPL WQHGRAICFA
110 120 130 140 150
DGWFEWKKEG DKKQPFFIYR ADGQPIFMAA IGSTPFERGD EAEGFLIVTA
160 170 180 190 200
AADQGLVDIH DRRPLVLSPE AAREWMRQEI SGKEASEIAA SGCVPANQFS
210 220
WHPVSRAVGN VKNQGAELIQ PV
Length:222
Mass (Da):24,979
Last modified:October 11, 2004 - v2
Checksum:iE203A1EA67119F1C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L13279 Genomic DNA No translation available.
U00096 Genomic DNA Translation: AAT48139.1
AP009048 Genomic DNA Translation: BAE76551.1
PIRiH64956
RefSeqiWP_000334583.1, NZ_LN832404.1
YP_025310.1, NC_000913.3

Genome annotation databases

EnsemblBacteriaiAAT48139; AAT48139; b1931
BAE76551; BAE76551; BAE76551
GeneIDi946435
KEGGiecj:JW1916
eco:b1931
PATRICifig|511145.12.peg.2013

Similar proteinsi

Entry informationi

Entry nameiYEDK_ECOLI
AccessioniPrimary (citable) accession number: P76318
Secondary accession number(s): Q2MB05
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: October 11, 2004
Last modified: March 28, 2018
This is version 108 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome
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Main funding by: National Institutes of Health