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Protein

Putative SOS response-associated peptidase YedK

Gene

yedK

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protease

Enzyme and pathway databases

BioCyciEcoCyc:EG11662-MONOMER.
ECOL316407:JW1916-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative SOS response-associated peptidase YedK (EC:3.4.-.-)
Gene namesi
Name:yedK
Synonyms:yedG
Ordered Locus Names:b1931, JW1916
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13278. yedK.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 222222Putative SOS response-associated peptidase YedKPRO_0000169094Add
BLAST

Proteomic databases

PaxDbiP76318.

Interactioni

Protein-protein interaction databases

BioGridi4261039. 9 interactions.
IntActiP76318. 14 interactions.
STRINGi511145.b1931.

Structurei

Secondary structure

1
222
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi5 – 73Combined sources
Helixi11 – 155Combined sources
Turni16 – 183Combined sources
Helixi21 – 233Combined sources
Beta strandi35 – 384Combined sources
Beta strandi42 – 509Combined sources
Beta strandi53 – 619Combined sources
Beta strandi75 – 773Combined sources
Helixi78 – 814Combined sources
Turni85 – 873Combined sources
Helixi88 – 936Combined sources
Beta strandi95 – 10612Combined sources
Beta strandi115 – 1206Combined sources
Beta strandi126 – 1327Combined sources
Helixi136 – 1383Combined sources
Beta strandi141 – 1433Combined sources
Beta strandi145 – 1517Combined sources
Helixi154 – 1585Combined sources
Beta strandi161 – 1644Combined sources
Helixi169 – 1768Combined sources
Helixi182 – 19211Combined sources
Helixi196 – 1983Combined sources
Beta strandi199 – 2035Combined sources
Helixi206 – 2094Combined sources
Helixi216 – 2194Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2ICUX-ray1.60A/B1-222[»]
ProteinModelPortaliP76318.
SMRiP76318. Positions 3-222.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP76318.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4108RAV. Bacteria.
COG2135. LUCA.
HOGENOMiHOG000104694.
InParanoidiP76318.
OMAiCGRFVIT.
PhylomeDBiP76318.

Family and domain databases

Gene3Di3.90.1680.10. 1 hit.
InterProiIPR003738. SRAP.
[Graphical view]
PANTHERiPTHR13604. PTHR13604. 1 hit.
PfamiPF02586. SRAP. 1 hit.
[Graphical view]
SUPFAMiSSF143081. SSF143081. 1 hit.

Sequencei

Sequence statusi: Complete.

P76318-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MCGRFAQSQT REDYLALLAE DIERDIPYDP EPIGRYNVAP GTKVLLLSER
60 70 80 90 100
DEHLHLDPVF WGYAPGWWDK PPLINARVET AATSRMFKPL WQHGRAICFA
110 120 130 140 150
DGWFEWKKEG DKKQPFFIYR ADGQPIFMAA IGSTPFERGD EAEGFLIVTA
160 170 180 190 200
AADQGLVDIH DRRPLVLSPE AAREWMRQEI SGKEASEIAA SGCVPANQFS
210 220
WHPVSRAVGN VKNQGAELIQ PV
Length:222
Mass (Da):24,979
Last modified:October 11, 2004 - v2
Checksum:iE203A1EA67119F1C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L13279 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAT48139.1.
AP009048 Genomic DNA. Translation: BAE76551.1.
PIRiH64956.
RefSeqiWP_000334583.1. NZ_LN832404.1.
YP_025310.1. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiAAT48139; AAT48139; b1931.
BAE76551; BAE76551; BAE76551.
GeneIDi946435.
KEGGiecj:JW1916.
eco:b1931.
PATRICi32119197. VBIEscCol129921_2013.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L13279 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAT48139.1.
AP009048 Genomic DNA. Translation: BAE76551.1.
PIRiH64956.
RefSeqiWP_000334583.1. NZ_LN832404.1.
YP_025310.1. NC_000913.3.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2ICUX-ray1.60A/B1-222[»]
ProteinModelPortaliP76318.
SMRiP76318. Positions 3-222.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261039. 9 interactions.
IntActiP76318. 14 interactions.
STRINGi511145.b1931.

Proteomic databases

PaxDbiP76318.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAT48139; AAT48139; b1931.
BAE76551; BAE76551; BAE76551.
GeneIDi946435.
KEGGiecj:JW1916.
eco:b1931.
PATRICi32119197. VBIEscCol129921_2013.

Organism-specific databases

EchoBASEiEB3063.
EcoGeneiEG13278. yedK.

Phylogenomic databases

eggNOGiENOG4108RAV. Bacteria.
COG2135. LUCA.
HOGENOMiHOG000104694.
InParanoidiP76318.
OMAiCGRFVIT.
PhylomeDBiP76318.

Enzyme and pathway databases

BioCyciEcoCyc:EG11662-MONOMER.
ECOL316407:JW1916-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP76318.
PROiP76318.

Family and domain databases

Gene3Di3.90.1680.10. 1 hit.
InterProiIPR003738. SRAP.
[Graphical view]
PANTHERiPTHR13604. PTHR13604. 1 hit.
PfamiPF02586. SRAP. 1 hit.
[Graphical view]
SUPFAMiSSF143081. SSF143081. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYEDK_ECOLI
AccessioniPrimary (citable) accession number: P76318
Secondary accession number(s): Q2MB05
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: October 11, 2004
Last modified: September 7, 2016
This is version 101 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.