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Protein

Putative SOS response-associated peptidase YedK

Gene

yedK

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protease

Enzyme and pathway databases

BioCyciEcoCyc:EG11662-MONOMER.
ECOL316407:JW1916-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative SOS response-associated peptidase YedK (EC:3.4.-.-)
Gene namesi
Name:yedK
Synonyms:yedG
Ordered Locus Names:b1931, JW1916
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13278. yedK.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001690941 – 222Putative SOS response-associated peptidase YedKAdd BLAST222

Proteomic databases

PaxDbiP76318.
PRIDEiP76318.

Interactioni

Protein-protein interaction databases

BioGridi4261039. 9 interactors.
IntActiP76318. 14 interactors.
STRINGi511145.b1931.

Structurei

Secondary structure

1222
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi5 – 7Combined sources3
Helixi11 – 15Combined sources5
Turni16 – 18Combined sources3
Helixi21 – 23Combined sources3
Beta strandi35 – 38Combined sources4
Beta strandi42 – 50Combined sources9
Beta strandi53 – 61Combined sources9
Beta strandi75 – 77Combined sources3
Helixi78 – 81Combined sources4
Turni85 – 87Combined sources3
Helixi88 – 93Combined sources6
Beta strandi95 – 106Combined sources12
Beta strandi115 – 120Combined sources6
Beta strandi126 – 132Combined sources7
Helixi136 – 138Combined sources3
Beta strandi141 – 143Combined sources3
Beta strandi145 – 151Combined sources7
Helixi154 – 158Combined sources5
Beta strandi161 – 164Combined sources4
Helixi169 – 176Combined sources8
Helixi182 – 192Combined sources11
Helixi196 – 198Combined sources3
Beta strandi199 – 203Combined sources5
Helixi206 – 209Combined sources4
Helixi216 – 219Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2ICUX-ray1.60A/B1-222[»]
ProteinModelPortaliP76318.
SMRiP76318.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP76318.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4108RAV. Bacteria.
COG2135. LUCA.
HOGENOMiHOG000104694.
InParanoidiP76318.
OMAiCGRFVIT.
PhylomeDBiP76318.

Family and domain databases

Gene3Di3.90.1680.10. 1 hit.
InterProiIPR003738. SRAP.
[Graphical view]
PANTHERiPTHR13604. PTHR13604. 1 hit.
PfamiPF02586. SRAP. 1 hit.
[Graphical view]
SUPFAMiSSF143081. SSF143081. 1 hit.

Sequencei

Sequence statusi: Complete.

P76318-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MCGRFAQSQT REDYLALLAE DIERDIPYDP EPIGRYNVAP GTKVLLLSER
60 70 80 90 100
DEHLHLDPVF WGYAPGWWDK PPLINARVET AATSRMFKPL WQHGRAICFA
110 120 130 140 150
DGWFEWKKEG DKKQPFFIYR ADGQPIFMAA IGSTPFERGD EAEGFLIVTA
160 170 180 190 200
AADQGLVDIH DRRPLVLSPE AAREWMRQEI SGKEASEIAA SGCVPANQFS
210 220
WHPVSRAVGN VKNQGAELIQ PV
Length:222
Mass (Da):24,979
Last modified:October 11, 2004 - v2
Checksum:iE203A1EA67119F1C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L13279 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAT48139.1.
AP009048 Genomic DNA. Translation: BAE76551.1.
PIRiH64956.
RefSeqiWP_000334583.1. NZ_LN832404.1.
YP_025310.1. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiAAT48139; AAT48139; b1931.
BAE76551; BAE76551; BAE76551.
GeneIDi946435.
KEGGiecj:JW1916.
eco:b1931.
PATRICi32119197. VBIEscCol129921_2013.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L13279 Genomic DNA. No translation available.
U00096 Genomic DNA. Translation: AAT48139.1.
AP009048 Genomic DNA. Translation: BAE76551.1.
PIRiH64956.
RefSeqiWP_000334583.1. NZ_LN832404.1.
YP_025310.1. NC_000913.3.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2ICUX-ray1.60A/B1-222[»]
ProteinModelPortaliP76318.
SMRiP76318.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261039. 9 interactors.
IntActiP76318. 14 interactors.
STRINGi511145.b1931.

Proteomic databases

PaxDbiP76318.
PRIDEiP76318.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAT48139; AAT48139; b1931.
BAE76551; BAE76551; BAE76551.
GeneIDi946435.
KEGGiecj:JW1916.
eco:b1931.
PATRICi32119197. VBIEscCol129921_2013.

Organism-specific databases

EchoBASEiEB3063.
EcoGeneiEG13278. yedK.

Phylogenomic databases

eggNOGiENOG4108RAV. Bacteria.
COG2135. LUCA.
HOGENOMiHOG000104694.
InParanoidiP76318.
OMAiCGRFVIT.
PhylomeDBiP76318.

Enzyme and pathway databases

BioCyciEcoCyc:EG11662-MONOMER.
ECOL316407:JW1916-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP76318.
PROiP76318.

Family and domain databases

Gene3Di3.90.1680.10. 1 hit.
InterProiIPR003738. SRAP.
[Graphical view]
PANTHERiPTHR13604. PTHR13604. 1 hit.
PfamiPF02586. SRAP. 1 hit.
[Graphical view]
SUPFAMiSSF143081. SSF143081. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYEDK_ECOLI
AccessioniPrimary (citable) accession number: P76318
Secondary accession number(s): Q2MB05
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: October 11, 2004
Last modified: November 2, 2016
This is version 103 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.