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Protein

Inner membrane protein YebZ

Gene

yebZ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7013-MONOMER.
ECOL316407:JW1829-MONOMER.

Protein family/group databases

TCDBi9.B.62.1.4. the copper resistance (copd) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YebZ
Gene namesi
Name:yebZ
Ordered Locus Names:b1840, JW1829
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14028. yebZ.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 1010PeriplasmicSequence analysis
Transmembranei11 – 3121HelicalSequence analysisAdd
BLAST
Topological domaini32 – 4918CytoplasmicSequence analysisAdd
BLAST
Transmembranei50 – 7021HelicalSequence analysisAdd
BLAST
Topological domaini71 – 8919PeriplasmicSequence analysisAdd
BLAST
Transmembranei90 – 11021HelicalSequence analysisAdd
BLAST
Topological domaini111 – 1177CytoplasmicSequence analysis
Transmembranei118 – 13821HelicalSequence analysisAdd
BLAST
Topological domaini139 – 15113PeriplasmicSequence analysisAdd
BLAST
Transmembranei152 – 17221HelicalSequence analysisAdd
BLAST
Topological domaini173 – 19523CytoplasmicSequence analysisAdd
BLAST
Transmembranei196 – 21621HelicalSequence analysisAdd
BLAST
Topological domaini217 – 2226PeriplasmicSequence analysis
Transmembranei223 – 24321HelicalSequence analysisAdd
BLAST
Topological domaini244 – 26017CytoplasmicSequence analysisAdd
BLAST
Transmembranei261 – 28121HelicalSequence analysisAdd
BLAST
Topological domaini282 – 2909PeriplasmicSequence analysis

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 290290Inner membrane protein YebZPRO_0000218127Add
BLAST

Proteomic databases

PaxDbiP76278.
PRIDEiP76278.

Interactioni

Protein-protein interaction databases

BioGridi4260359. 8 interactions.
STRINGi511145.b1840.

Structurei

3D structure databases

ProteinModelPortaliP76278.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the CopD family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4108PNC. Bacteria.
COG1276. LUCA.
HOGENOMiHOG000121218.
KOiK07245.
OMAiMLWLKIA.

Family and domain databases

InterProiIPR008457. Cu-R_CopD.
[Graphical view]
PfamiPF05425. CopD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P76278-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLAFTWIALR FIHFTSLMLV FGFAMYGAWL APLTIRRLLA KRFLRLQQHA
60 70 80 90 100
AVWSLISATA MLAVQGGLMG TGWTDVFSPN IWQAVLQTQF GGIWLWQIVL
110 120 130 140 150
ALVTLIVALM QPRNMPRLLF MLTTAQFILL AGVGHATLNE GVTAKIHQTN
160 170 180 190 200
HAIHLICAAA WFGGLLPVLW CMQLIKGRWR HQAIQALMRF SWCGHFAVIG
210 220 230 240 250
VLASGVLNAL LITGFPPTLT TYWGQLLLLK AILVMIMVVI ALANRYVLVP
260 270 280 290
RMRQDEDRAA PWFVWMTKLE WAIGAVVLVI ISLLATLEPF
Length:290
Mass (Da):32,526
Last modified:February 1, 1997 - v1
Checksum:iC4E1C8D98DE9A8FA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74910.1.
AP009048 Genomic DNA. Translation: BAE76544.1.
PIRiH64945.
RefSeqiNP_416354.1. NC_000913.3.
WP_000879289.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74910; AAC74910; b1840.
BAE76544; BAE76544; BAE76544.
GeneIDi947078.
KEGGiecj:JW1829.
eco:b1840.
PATRICi32119001. VBIEscCol129921_1918.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74910.1.
AP009048 Genomic DNA. Translation: BAE76544.1.
PIRiH64945.
RefSeqiNP_416354.1. NC_000913.3.
WP_000879289.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76278.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260359. 8 interactions.
STRINGi511145.b1840.

Protein family/group databases

TCDBi9.B.62.1.4. the copper resistance (copd) family.

Proteomic databases

PaxDbiP76278.
PRIDEiP76278.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74910; AAC74910; b1840.
BAE76544; BAE76544; BAE76544.
GeneIDi947078.
KEGGiecj:JW1829.
eco:b1840.
PATRICi32119001. VBIEscCol129921_1918.

Organism-specific databases

EchoBASEiEB3782.
EcoGeneiEG14028. yebZ.

Phylogenomic databases

eggNOGiENOG4108PNC. Bacteria.
COG1276. LUCA.
HOGENOMiHOG000121218.
KOiK07245.
OMAiMLWLKIA.

Enzyme and pathway databases

BioCyciEcoCyc:G7013-MONOMER.
ECOL316407:JW1829-MONOMER.

Miscellaneous databases

PROiP76278.

Family and domain databases

InterProiIPR008457. Cu-R_CopD.
[Graphical view]
PfamiPF05425. CopD. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYEBZ_ECOLI
AccessioniPrimary (citable) accession number: P76278
Secondary accession number(s): Q2MB12
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 27, 2001
Last sequence update: February 1, 1997
Last modified: September 7, 2016
This is version 107 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.