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Protein

Putative dioxygenase subunit beta YeaX

Gene

yeaX

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Cofactori

FMNBy similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi270Iron-sulfur (2Fe-2S)PROSITE-ProRule annotation1
Metal bindingi275Iron-sulfur (2Fe-2S)PROSITE-ProRule annotation1
Metal bindingi278Iron-sulfur (2Fe-2S)PROSITE-ProRule annotation1
Metal bindingi309Iron-sulfur (2Fe-2S)PROSITE-ProRule annotation1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi113 – 226NADBy similarityAdd BLAST114

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Biological processi

Electron transport, Transport

Keywords - Ligandi

2Fe-2S, Flavoprotein, FMN, Iron, Iron-sulfur, Metal-binding, NAD

Enzyme and pathway databases

BioCyciEcoCyc:G6989-MONOMER.
ECOL316407:JW1792-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative dioxygenase subunit beta YeaX (EC:1.-.-.-)
Gene namesi
Name:yeaX
Ordered Locus Names:b1803, JW1792
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13510. yeaX.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001894051 – 321Putative dioxygenase subunit beta YeaXAdd BLAST321

Proteomic databases

PaxDbiP76254.
PRIDEiP76254.

Interactioni

Subunit structurei

Probable heterodimer of YeaW and YeaX.

Protein-protein interaction databases

BioGridi4260337. 16 interactors.
STRINGi511145.b1803.

Structurei

3D structure databases

ProteinModelPortaliP76254.
SMRiP76254.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini4 – 109FAD-binding FR-typePROSITE-ProRule annotationAdd BLAST106
Domaini233 – 3212Fe-2S ferredoxin-typePROSITE-ProRule annotationAdd BLAST89

Sequence similaritiesi

Belongs to the PDR/VanB family.Curated
Contains 1 2Fe-2S ferredoxin-type domain.PROSITE-ProRule annotation
Contains 1 FAD-binding FR-type domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105E3J. Bacteria.
COG1018. LUCA.
HOGENOMiHOG000141052.
InParanoidiP76254.
OMAiSHILVQM.
PhylomeDBiP76254.

Family and domain databases

CDDicd00207. fer2. 1 hit.
Gene3Di3.10.20.30. 1 hit.
InterProiIPR001041. 2Fe-2S_ferredoxin-type.
IPR006058. 2Fe2S_fd_BS.
IPR012675. Beta-grasp_dom.
IPR017927. Fd_Rdtase_FAD-bd.
IPR008333. OxRdtase_FAD-bd_dom.
IPR001433. OxRdtase_FAD/NAD-bd.
IPR000951. Ph_dOase_redase.
IPR017938. Riboflavin_synthase-like_b-brl.
[Graphical view]
PfamiPF00970. FAD_binding_6. 1 hit.
PF00111. Fer2. 1 hit.
PF00175. NAD_binding_1. 1 hit.
[Graphical view]
PRINTSiPR00409. PHDIOXRDTASE.
SUPFAMiSSF54292. SSF54292. 1 hit.
SSF63380. SSF63380. 1 hit.
PROSITEiPS00197. 2FE2S_FER_1. 1 hit.
PS51085. 2FE2S_FER_2. 1 hit.
PS51384. FAD_FR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P76254-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDYQMFEVQ VSQVEPLTEQ VKRFTLVATD GKPLPAFTGG SHVIVQMSDG
60 70 80 90 100
DNQYSNAYSL LSSPHDTSCY QIAVRLEENS RGGSRFLHQQ VKVGDRLTIS
110 120 130 140 150
TPNNLFALIP SARKHLFIAG GIGITPFLSH MAELQHSDVD WQLHYCSRNP
160 170 180 190 200
ESCAFRDELV QHPQAEKVHL HHSSTGTRLE LARLLADIEP GTHVYTCGPE
210 220 230 240 250
ALIEAVRSEA ARLDIAADTL HFEQFAIEDK TGDAFTLVLA RSGKEFVVPE
260 270 280 290 300
EMTILQVIEN NKAAKVECLC REGVCGTCET AILEGEADHR DQYFSDEERA
310 320
SQQSMLICCS RAKGKRLVLD L
Length:321
Mass (Da):35,661
Last modified:February 1, 1997 - v1
Checksum:iBD34122B24C08DBC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74873.1.
AP009048 Genomic DNA. Translation: BAA15598.1.
PIRiC64941.
RefSeqiNP_416317.1. NC_000913.3.
WP_001287026.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74873; AAC74873; b1803.
BAA15598; BAA15598; BAA15598.
GeneIDi946329.
KEGGiecj:JW1792.
eco:b1803.
PATRICi32118923. VBIEscCol129921_1879.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74873.1.
AP009048 Genomic DNA. Translation: BAA15598.1.
PIRiC64941.
RefSeqiNP_416317.1. NC_000913.3.
WP_001287026.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76254.
SMRiP76254.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260337. 16 interactors.
STRINGi511145.b1803.

Proteomic databases

PaxDbiP76254.
PRIDEiP76254.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74873; AAC74873; b1803.
BAA15598; BAA15598; BAA15598.
GeneIDi946329.
KEGGiecj:JW1792.
eco:b1803.
PATRICi32118923. VBIEscCol129921_1879.

Organism-specific databases

EchoBASEiEB3283.
EcoGeneiEG13510. yeaX.

Phylogenomic databases

eggNOGiENOG4105E3J. Bacteria.
COG1018. LUCA.
HOGENOMiHOG000141052.
InParanoidiP76254.
OMAiSHILVQM.
PhylomeDBiP76254.

Enzyme and pathway databases

BioCyciEcoCyc:G6989-MONOMER.
ECOL316407:JW1792-MONOMER.

Miscellaneous databases

PROiP76254.

Family and domain databases

CDDicd00207. fer2. 1 hit.
Gene3Di3.10.20.30. 1 hit.
InterProiIPR001041. 2Fe-2S_ferredoxin-type.
IPR006058. 2Fe2S_fd_BS.
IPR012675. Beta-grasp_dom.
IPR017927. Fd_Rdtase_FAD-bd.
IPR008333. OxRdtase_FAD-bd_dom.
IPR001433. OxRdtase_FAD/NAD-bd.
IPR000951. Ph_dOase_redase.
IPR017938. Riboflavin_synthase-like_b-brl.
[Graphical view]
PfamiPF00970. FAD_binding_6. 1 hit.
PF00111. Fer2. 1 hit.
PF00175. NAD_binding_1. 1 hit.
[Graphical view]
PRINTSiPR00409. PHDIOXRDTASE.
SUPFAMiSSF54292. SSF54292. 1 hit.
SSF63380. SSF63380. 1 hit.
PROSITEiPS00197. 2FE2S_FER_1. 1 hit.
PS51085. 2FE2S_FER_2. 1 hit.
PS51384. FAD_FR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYEAX_ECOLI
AccessioniPrimary (citable) accession number: P76254
Secondary accession number(s): O07970, O07972
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 129 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.