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Protein

Putative metabolite transport protein YdjK

Gene

ydjK

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciEcoCyc:B1775-MONOMER.
ECOL316407:JW5290-MONOMER.

Protein family/group databases

TCDBi2.A.1.1.115. the major facilitator superfamily (mfs).

Names & Taxonomyi

Protein namesi
Recommended name:
Putative metabolite transport protein YdjK
Gene namesi
Name:ydjK
Ordered Locus Names:b1775, JW5290
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13487. ydjK.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 2525CytoplasmicSequence analysisAdd
BLAST
Transmembranei26 – 4621Helical; Name=1Sequence analysisAdd
BLAST
Topological domaini47 – 6014PeriplasmicSequence analysisAdd
BLAST
Transmembranei61 – 8121Helical; Name=2Sequence analysisAdd
BLAST
Topological domaini82 – 909CytoplasmicSequence analysis
Transmembranei91 – 11121Helical; Name=3Sequence analysisAdd
BLAST
Topological domaini112 – 1121PeriplasmicSequence analysis
Transmembranei113 – 13321Helical; Name=4Sequence analysisAdd
BLAST
Topological domaini134 – 15320CytoplasmicSequence analysisAdd
BLAST
Transmembranei154 – 17421Helical; Name=5Sequence analysisAdd
BLAST
Topological domaini175 – 1817PeriplasmicSequence analysis
Transmembranei182 – 20221Helical; Name=6Sequence analysisAdd
BLAST
Topological domaini203 – 27169CytoplasmicSequence analysisAdd
BLAST
Transmembranei272 – 29221Helical; Name=7Sequence analysisAdd
BLAST
Topological domaini293 – 3019PeriplasmicSequence analysis
Transmembranei302 – 32221Helical; Name=8Sequence analysisAdd
BLAST
Topological domaini323 – 3297CytoplasmicSequence analysis
Transmembranei330 – 35021Helical; Name=9Sequence analysisAdd
BLAST
Topological domaini351 – 3511PeriplasmicSequence analysis
Transmembranei352 – 37221Helical; Name=10Sequence analysisAdd
BLAST
Topological domaini373 – 39927CytoplasmicSequence analysisAdd
BLAST
Transmembranei400 – 42021Helical; Name=11Sequence analysisAdd
BLAST
Transmembranei421 – 44121Helical; Name=12Sequence analysisAdd
BLAST
Topological domaini442 – 45918CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: GO_Central
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 459459Putative metabolite transport protein YdjKPRO_0000050485Add
BLAST

Proteomic databases

PaxDbiP76230.

Interactioni

Protein-protein interaction databases

BioGridi4259415. 104 interactions.
STRINGi511145.b1775.

Structurei

3D structure databases

ProteinModelPortaliP76230.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4107TE1. Bacteria.
ENOG410ZVY1. LUCA.
HOGENOMiHOG000114540.
InParanoidiP76230.
KOiK08369.
OMAiDICTADH.
OrthoDBiEOG6091DB.
PhylomeDBiP76230.

Family and domain databases

InterProiIPR020846. MFS_dom.
IPR005828. MFS_sugar_transport_like.
[Graphical view]
PfamiPF00083. Sugar_tr. 1 hit.
[Graphical view]
SUPFAMiSSF103473. SSF103473. 1 hit.
PROSITEiPS50850. MFS. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P76230-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEQITKPHCG ARLDRLPDCR WHSSMFAIVA FGLLVCWSNA VGGLILAQLK
60 70 80 90 100
ALGWTDNSTT ATFSAITTAG MFLGALVGGI IGDKTGRRNA FILYEAIHIA
110 120 130 140 150
SMVVGAFSPN MDFLIACRFV MGVGLGALLV TLFAGFTEYM PGRNRGTWSS
160 170 180 190 200
RVSFIGNWSY PLCSLIAMGL TPLISAEWNW RVQLLIPAIL SLIATALAWR
210 220 230 240 250
YFPESPRWLE SRGRYQEAEK VMRSIEEGVI RQTGKPLPPV VIADDGKAPQ
260 270 280 290 300
AVPYSALLTG VLLKRVILGS CVLIAMNVVQ YTLINWLPTI FMTQGINLKD
310 320 330 340 350
SIVLNTMSMF GAPFGIFIAM LVMDKIPRKT MGVGLLILIA VLGYIYSLQT
360 370 380 390 400
SMLLITLIGF FLITFVYMYV CYASAVYVPE IWPTEAKLRG SGLANAVGRI
410 420 430 440 450
SGIAAPYAVA VLLSSYGVTG VFILLGAVSI IVAIAIATIG IETKGVSVES

LSIDAVANK
Length:459
Mass (Da):49,602
Last modified:February 1, 1997 - v1
Checksum:iBC8AB53ECB8BDD77
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74845.1.
AP009048 Genomic DNA. Translation: BAA15573.2.
PIRiG64937.
RefSeqiNP_416289.1. NC_000913.3.
WP_000435292.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74845; AAC74845; b1775.
BAA15573; BAA15573; BAA15573.
GeneIDi946293.
KEGGiecj:JW5290.
eco:b1775.
PATRICi32118861. VBIEscCol129921_1848.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74845.1.
AP009048 Genomic DNA. Translation: BAA15573.2.
PIRiG64937.
RefSeqiNP_416289.1. NC_000913.3.
WP_000435292.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76230.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259415. 104 interactions.
STRINGi511145.b1775.

Protein family/group databases

TCDBi2.A.1.1.115. the major facilitator superfamily (mfs).

Proteomic databases

PaxDbiP76230.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74845; AAC74845; b1775.
BAA15573; BAA15573; BAA15573.
GeneIDi946293.
KEGGiecj:JW5290.
eco:b1775.
PATRICi32118861. VBIEscCol129921_1848.

Organism-specific databases

EchoBASEiEB3260.
EcoGeneiEG13487. ydjK.

Phylogenomic databases

eggNOGiENOG4107TE1. Bacteria.
ENOG410ZVY1. LUCA.
HOGENOMiHOG000114540.
InParanoidiP76230.
KOiK08369.
OMAiDICTADH.
OrthoDBiEOG6091DB.
PhylomeDBiP76230.

Enzyme and pathway databases

BioCyciEcoCyc:B1775-MONOMER.
ECOL316407:JW5290-MONOMER.

Miscellaneous databases

PROiP76230.

Family and domain databases

InterProiIPR020846. MFS_dom.
IPR005828. MFS_sugar_transport_like.
[Graphical view]
PfamiPF00083. Sugar_tr. 1 hit.
[Graphical view]
SUPFAMiSSF103473. SSF103473. 1 hit.
PROSITEiPS50850. MFS. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYDJK_ECOLI
AccessioniPrimary (citable) accession number: P76230
Secondary accession number(s): P76911
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1999
Last sequence update: February 1, 1997
Last modified: February 17, 2016
This is version 117 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.