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Protein

Inner membrane protein YnjF

Gene

ynjF

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Transferase

Enzyme and pathway databases

BioCyciEcoCyc:G6953-MONOMER.
ECOL316407:JW1747-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YnjF
Gene namesi
Name:ynjF
Ordered Locus Names:b1758, JW1747
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14008. ynjF.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 3737PeriplasmicSequence analysisAdd
BLAST
Transmembranei38 – 6023HelicalSequence analysisAdd
BLAST
Topological domaini61 – 7919CytoplasmicSequence analysisAdd
BLAST
Transmembranei80 – 10223HelicalSequence analysisAdd
BLAST
Topological domaini103 – 1119PeriplasmicSequence analysis
Transmembranei112 – 13423HelicalSequence analysisAdd
BLAST
Topological domaini135 – 14612CytoplasmicSequence analysisAdd
BLAST
Transmembranei147 – 16923HelicalSequence analysisAdd
BLAST
Topological domaini170 – 1734PeriplasmicSequence analysis
Transmembranei174 – 19623HelicalSequence analysisAdd
BLAST
Topological domaini197 – 20610CytoplasmicSequence analysis

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 206206Inner membrane protein YnjFPRO_0000056821Add
BLAST

Proteomic databases

PaxDbiP76226.
PRIDEiP76226.

Interactioni

Protein-protein interaction databases

BioGridi4259711. 165 interactions.
STRINGi511145.b1758.

Structurei

3D structure databases

ProteinModelPortaliP76226.
SMRiP76226. Positions 3-109.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4108T9J. Bacteria.
COG0558. LUCA.
HOGENOMiHOG000275263.
InParanoidiP76226.
OMAiFLAFAIM.
OrthoDBiEOG6VHZBT.
PhylomeDBiP76226.

Family and domain databases

InterProiIPR000462. CDP-OH_P_trans.
[Graphical view]
PfamiPF01066. CDP-OH_P_transf. 1 hit.
[Graphical view]
PROSITEiPS00379. CDP_ALCOHOL_P_TRANSF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P76226-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLDRHLHPRI KPLLHQCVRV LDKPGITPDG LTLVGFAIGV LALPFLALGW
60 70 80 90 100
YLAALVVILL NRLLDGLDGA LARRRELTDA GGFLDISLDF LFYALVPFGF
110 120 130 140 150
ILAAPEQNAL AGGWLLFAFI GTGSSFLAFA ALAAKHQIDN PGYAHKSFYY
160 170 180 190 200
LGGLTEGTET ILLFVLGCLF PAWFAWFAWI FGALCWMTTF TRVWSGYLTL

KSLQRQ
Length:206
Mass (Da):22,752
Last modified:May 30, 2000 - v2
Checksum:iE4C20A0810F90641
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74828.2.
AP009048 Genomic DNA. Translation: BAE76522.1.
PIRiF64935.
RefSeqiNP_416272.2. NC_000913.3.
WP_001295484.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74828; AAC74828; b1758.
BAE76522; BAE76522; BAE76522.
GeneIDi946221.
KEGGiecj:JW1747.
eco:b1758.
PATRICi32118827. VBIEscCol129921_1831.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74828.2.
AP009048 Genomic DNA. Translation: BAE76522.1.
PIRiF64935.
RefSeqiNP_416272.2. NC_000913.3.
WP_001295484.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76226.
SMRiP76226. Positions 3-109.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259711. 165 interactions.
STRINGi511145.b1758.

Proteomic databases

PaxDbiP76226.
PRIDEiP76226.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74828; AAC74828; b1758.
BAE76522; BAE76522; BAE76522.
GeneIDi946221.
KEGGiecj:JW1747.
eco:b1758.
PATRICi32118827. VBIEscCol129921_1831.

Organism-specific databases

EchoBASEiEB3764.
EcoGeneiEG14008. ynjF.

Phylogenomic databases

eggNOGiENOG4108T9J. Bacteria.
COG0558. LUCA.
HOGENOMiHOG000275263.
InParanoidiP76226.
OMAiFLAFAIM.
OrthoDBiEOG6VHZBT.
PhylomeDBiP76226.

Enzyme and pathway databases

BioCyciEcoCyc:G6953-MONOMER.
ECOL316407:JW1747-MONOMER.

Miscellaneous databases

PROiP76226.

Family and domain databases

InterProiIPR000462. CDP-OH_P_trans.
[Graphical view]
PfamiPF01066. CDP-OH_P_transf. 1 hit.
[Graphical view]
PROSITEiPS00379. CDP_ALCOHOL_P_TRANSF. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYNJF_ECOLI
AccessioniPrimary (citable) accession number: P76226
Secondary accession number(s): Q2MB34
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: May 30, 2000
Last modified: April 13, 2016
This is version 103 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.