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Protein

Inner membrane ABC transporter permease protein YnjC

Gene

ynjC

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Probably part of the binding-protein-dependent transport system YnjCD. Probably responsible for the translocation of the substrate across the membrane.

GO - Biological processi

Keywordsi

Biological processTransport

Enzyme and pathway databases

BioCyciEcoCyc:YNJC-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane ABC transporter permease protein YnjC
Gene namesi
Name:ynjC
Ordered Locus Names:b1755, JW5285
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14005 ynjC

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 8CytoplasmicSequence analysis8
Transmembranei9 – 29HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini30 – 62PeriplasmicSequence analysisAdd BLAST33
Transmembranei63 – 83HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini84 – 91CytoplasmicSequence analysis8
Transmembranei92 – 112HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini113 – 130PeriplasmicSequence analysisAdd BLAST18
Transmembranei131 – 151HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini152 – 189CytoplasmicSequence analysisAdd BLAST38
Transmembranei190 – 210HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini211 – 239PeriplasmicSequence analysisAdd BLAST29
Transmembranei240 – 260HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini261 – 284CytoplasmicSequence analysisAdd BLAST24
Transmembranei285 – 305HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini306 – 318PeriplasmicSequence analysisAdd BLAST13
Transmembranei319 – 339HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini340 – 345CytoplasmicSequence analysis6
Transmembranei346 – 366HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini367 – 374PeriplasmicSequence analysis8
Transmembranei375 – 395HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini396 – 432CytoplasmicSequence analysisAdd BLAST37
Transmembranei433 – 453HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini454 – 485PeriplasmicSequence analysisAdd BLAST32
Transmembranei486 – 506HelicalPROSITE-ProRule annotationAdd BLAST21
Topological domaini507 – 511CytoplasmicSequence analysis5

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000602631 – 511Inner membrane ABC transporter permease protein YnjCAdd BLAST511

Proteomic databases

PaxDbiP76224
PRIDEiP76224

Interactioni

Protein-protein interaction databases

BioGridi4262127, 215 interactors
STRINGi316385.ECDH10B_1893

Structurei

3D structure databases

ProteinModelPortaliP76224
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini54 – 255ABC transmembrane type-1 1PROSITE-ProRule annotationAdd BLAST202
Domaini315 – 496ABC transmembrane type-1 2PROSITE-ProRule annotationAdd BLAST182

Sequence similaritiesi

Keywords - Domaini

Repeat, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105CXZ Bacteria
COG4135 LUCA
HOGENOMiHOG000275274
KOiK05778
OMAiVLAWQWL

Family and domain databases

CDDicd06261 TM_PBP2, 1 hit
Gene3Di1.10.3720.10, 2 hits
InterProiView protein in InterPro
IPR000515 MetI-like
IPR035906 MetI-like_sf
PfamiView protein in Pfam
PF00528 BPD_transp_1, 1 hit
SUPFAMiSSF161098 SSF161098, 2 hits
PROSITEiView protein in PROSITE
PS50928 ABC_TM1, 2 hits

Sequencei

Sequence statusi: Complete.

P76224-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATPLRYALI FLLWAMVAVI YAPLIPAALT LISPALSLTH WQALFADPQL
60 70 80 90 100
PQALLATLVS TTIAAVGALL IALLVIVALW PGPKWQRMCA RLPWLLAIPH
110 120 130 140 150
VAFATSALLL FADGGLLYDY FPYFTPPMDR FGIGLGLTLA VKESAFLLWI
160 170 180 190 200
LAAVLSEKWL LQQVIVLDSL GYSRWQCLNW LLLPSVAPAL AMAMLAIVAW
210 220 230 240 250
SLSVVDVAII LGPGNPPTLA VISWQWLTQG DIDQQTKGAL ASLLLMLLLA
260 270 280 290 300
AYVLLSYLLW RSWRRTIPRV DGVRKPATPL LPGNTLAIFL PLTGVLCVVL
310 320 330 340 350
LAILADQSTI NSEALINSLT MGLVATFIAL LLLLLWLEWG PQRRQLWLWL
360 370 380 390 400
PILLPALPLV AGQYTLALWL KLDGSWTAVV WGHLLWVMPW MLFILQPAWQ
410 420 430 440 450
RIDSRLILIA QTLGWSRAKI FFYVKCPLML RPVLIAFAVG FAVGIAQYMP
460 470 480 490 500
TLWLGAGRFP TLTTEAVALS SGGSNGILAA QALWQLLLPL IIFALTALVA
510
KWVGYVRQGL R
Length:511
Mass (Da):56,243
Last modified:December 15, 1998 - v2
Checksum:i07CDFCCE729BF369
GO

Sequence cautioni

The sequence BAA15546 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC74825.2
AP009048 Genomic DNA Translation: BAA15546.2 Different initiation.
PIRiC64935
RefSeqiNP_416269.4, NC_000913.3
WP_000224958.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC74825; AAC74825; b1755
BAA15546; BAA15546; BAA15546
GeneIDi946273
KEGGiecj:JW5285
eco:b1755
PATRICifig|1411691.4.peg.500

Entry informationi

Entry nameiYNJC_ECOLI
AccessioniPrimary (citable) accession number: P76224
Secondary accession number(s): P76908
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: December 15, 1998
Last modified: March 28, 2018
This is version 124 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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