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Protein

TVP38/TMEM64 family inner membrane protein YdjZ

Gene

ydjZ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6947-MONOMER.
ECOL316407:JW1741-MONOMER.

Protein family/group databases

TCDBi9.B.27.1.2. the deda or ydjx-z (deda) family.

Names & Taxonomyi

Protein namesi
Recommended name:
TVP38/TMEM64 family inner membrane protein YdjZ
Gene namesi
Name:ydjZ
Ordered Locus Names:b1752, JW1741
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14002. ydjZ.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 1313PeriplasmicSequence analysisAdd
BLAST
Transmembranei14 – 3421HelicalSequence analysisAdd
BLAST
Topological domaini35 – 6430CytoplasmicSequence analysisAdd
BLAST
Transmembranei65 – 8521HelicalSequence analysisAdd
BLAST
Topological domaini86 – 9510PeriplasmicSequence analysis
Transmembranei96 – 11621HelicalSequence analysisAdd
BLAST
Topological domaini117 – 17660CytoplasmicSequence analysisAdd
BLAST
Transmembranei177 – 19721HelicalSequence analysisAdd
BLAST
Topological domaini198 – 2025PeriplasmicSequence analysis
Transmembranei203 – 22321HelicalSequence analysisAdd
BLAST
Topological domaini224 – 23512CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 235235TVP38/TMEM64 family inner membrane protein YdjZPRO_0000198634Add
BLAST

Proteomic databases

PaxDbiP76221.
PRIDEiP76221.

Interactioni

Protein-protein interaction databases

BioGridi4259418. 6 interactions.
STRINGi511145.b1752.

Structurei

3D structure databases

ProteinModelPortaliP76221.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the TVP38/TMEM64 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4108N5C. Bacteria.
COG0398. LUCA.
HOGENOMiHOG000066621.
InParanoidiP76221.
OMAiKIDAQQP.
OrthoDBiEOG6VMTMW.
PhylomeDBiP76221.

Family and domain databases

InterProiIPR032816. SNARE_assoc.
IPR015414. TMEM64/TMEM41.
[Graphical view]
PANTHERiPTHR12677. PTHR12677. 1 hit.
PfamiPF09335. SNARE_assoc. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P76221-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMMMQSRKIW YYRITLIILL FAMLLAWALL PGVHEFINRS VAAFAAVDQQ
60 70 80 90 100
GIERFIQSYG ALAAVVSFLL MILQAIAAPL PAFLITFANA SLFGAFWGGL
110 120 130 140 150
LSWTSSMAGA ALCFFIARVM GREVVEKLTG KTVLDSMDGF FTRYGKHTIL
160 170 180 190 200
VCRLLPFVPF DPISYAAGLT SIRFRSFFIA TGLGQLPATI VYSWAGSMLT
210 220 230
GGTFWFVTGL FILFALTVVI FMAKKIWLER QKRNA
Length:235
Mass (Da):26,160
Last modified:February 1, 1997 - v1
Checksum:i8B025135FDC66DDD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74822.1.
AP009048 Genomic DNA. Translation: BAE76519.1.
PIRiH64934.
RefSeqiNP_416266.1. NC_000913.3.
WP_000980098.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74822; AAC74822; b1752.
BAE76519; BAE76519; BAE76519.
GeneIDi946269.
KEGGiecj:JW1741.
eco:b1752.
PATRICi32118815. VBIEscCol129921_1825.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74822.1.
AP009048 Genomic DNA. Translation: BAE76519.1.
PIRiH64934.
RefSeqiNP_416266.1. NC_000913.3.
WP_000980098.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76221.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259418. 6 interactions.
STRINGi511145.b1752.

Protein family/group databases

TCDBi9.B.27.1.2. the deda or ydjx-z (deda) family.

Proteomic databases

PaxDbiP76221.
PRIDEiP76221.

Protocols and materials databases

DNASUi946269.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74822; AAC74822; b1752.
BAE76519; BAE76519; BAE76519.
GeneIDi946269.
KEGGiecj:JW1741.
eco:b1752.
PATRICi32118815. VBIEscCol129921_1825.

Organism-specific databases

EchoBASEiEB3758.
EcoGeneiEG14002. ydjZ.

Phylogenomic databases

eggNOGiENOG4108N5C. Bacteria.
COG0398. LUCA.
HOGENOMiHOG000066621.
InParanoidiP76221.
OMAiKIDAQQP.
OrthoDBiEOG6VMTMW.
PhylomeDBiP76221.

Enzyme and pathway databases

BioCyciEcoCyc:G6947-MONOMER.
ECOL316407:JW1741-MONOMER.

Miscellaneous databases

PROiP76221.

Family and domain databases

InterProiIPR032816. SNARE_assoc.
IPR015414. TMEM64/TMEM41.
[Graphical view]
PANTHERiPTHR12677. PTHR12677. 1 hit.
PfamiPF09335. SNARE_assoc. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYDJZ_ECOLI
AccessioniPrimary (citable) accession number: P76221
Secondary accession number(s): Q2MB37
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: January 20, 2016
This is version 105 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.