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Protein

TVP38/TMEM64 family membrane protein YdjX

Gene

ydjX

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6945-MONOMER.
ECOL316407:JW1739-MONOMER.

Protein family/group databases

TCDBi9.B.27.1.1. the deda or ydjx-z (deda) family.

Names & Taxonomyi

Protein namesi
Recommended name:
TVP38/TMEM64 family membrane protein YdjX
Gene namesi
Name:ydjX
Ordered Locus Names:b1750, JW1739
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14000. ydjX.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei7 – 27HelicalSequence analysisAdd BLAST21
Transmembranei50 – 70HelicalSequence analysisAdd BLAST21
Transmembranei72 – 92HelicalSequence analysisAdd BLAST21
Transmembranei156 – 176HelicalSequence analysisAdd BLAST21
Transmembranei192 – 212HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001986331 – 236TVP38/TMEM64 family membrane protein YdjXAdd BLAST236

Proteomic databases

PaxDbiP76219.
PRIDEiP76219.

Interactioni

Protein-protein interaction databases

BioGridi4260318. 116 interactors.
DIPiDIP-11779N.
IntActiP76219. 1 interactor.
STRINGi511145.b1750.

Structurei

3D structure databases

ProteinModelPortaliP76219.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the TVP38/TMEM64 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4108RSN. Bacteria.
COG0398. LUCA.
HOGENOMiHOG000121087.
InParanoidiP76219.
OMAiISHFGVW.
PhylomeDBiP76219.

Family and domain databases

InterProiIPR032816. SNARE_assoc.
IPR015414. TMEM64/TMEM41.
[Graphical view]
PANTHERiPTHR12677. PTHR12677. 1 hit.
PfamiPF09335. SNARE_assoc. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P76219-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNAERKFLFA CLIFALVIYA IHAFGLFDLL TDLPHLQTLI RQSGFFGYSL
60 70 80 90 100
YILLFIIATL LLLPGSILVI AGGIVFGPLL GTLLSLIAAT LASSCSFLLA
110 120 130 140 150
RWLGRDLLLK YVGHSNTFQA IEKGIARNGI DFLILTRLIP LFPYNIQNYA
160 170 180 190 200
YGLTTIAFWP YTLISALTTL PGIVIYTVMA SDLANEGITL RFILQLCLAG
210 220 230
LALFILVQLA KLYARHKHVD LSASRRSPLT HPKNEG
Length:236
Mass (Da):26,058
Last modified:July 15, 1998 - v2
Checksum:i7CA4CB1FEE15448D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74820.2.
AP009048 Genomic DNA. Translation: BAA15541.1.
PIRiF64934.
RefSeqiNP_416264.4. NC_000913.3.
WP_001300395.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74820; AAC74820; b1750.
BAA15541; BAA15541; BAA15541.
GeneIDi946250.
KEGGiecj:JW1739.
eco:b1750.
PATRICi32118811. VBIEscCol129921_1823.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74820.2.
AP009048 Genomic DNA. Translation: BAA15541.1.
PIRiF64934.
RefSeqiNP_416264.4. NC_000913.3.
WP_001300395.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76219.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260318. 116 interactors.
DIPiDIP-11779N.
IntActiP76219. 1 interactor.
STRINGi511145.b1750.

Protein family/group databases

TCDBi9.B.27.1.1. the deda or ydjx-z (deda) family.

Proteomic databases

PaxDbiP76219.
PRIDEiP76219.

Protocols and materials databases

DNASUi946250.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74820; AAC74820; b1750.
BAA15541; BAA15541; BAA15541.
GeneIDi946250.
KEGGiecj:JW1739.
eco:b1750.
PATRICi32118811. VBIEscCol129921_1823.

Organism-specific databases

EchoBASEiEB3756.
EcoGeneiEG14000. ydjX.

Phylogenomic databases

eggNOGiENOG4108RSN. Bacteria.
COG0398. LUCA.
HOGENOMiHOG000121087.
InParanoidiP76219.
OMAiISHFGVW.
PhylomeDBiP76219.

Enzyme and pathway databases

BioCyciEcoCyc:G6945-MONOMER.
ECOL316407:JW1739-MONOMER.

Miscellaneous databases

PROiP76219.

Family and domain databases

InterProiIPR032816. SNARE_assoc.
IPR015414. TMEM64/TMEM41.
[Graphical view]
PANTHERiPTHR12677. PTHR12677. 1 hit.
PfamiPF09335. SNARE_assoc. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYDJX_ECOLI
AccessioniPrimary (citable) accession number: P76219
Secondary accession number(s): P77229
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: July 15, 1998
Last modified: November 2, 2016
This is version 108 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.