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Protein

Inner membrane transport protein YdiN

Gene

ydiN

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • substrate-specific transmembrane transporter activity Source: GO_Central
  • uniporter activity Source: EcoCyc
Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciEcoCyc:B1691-MONOMER.
ECOL316407:JW5274-MONOMER.

Protein family/group databases

TCDBi2.A.1.15.13. the major facilitator superfamily (mfs).

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane transport protein YdiN
Gene namesi
Name:ydiN
Ordered Locus Names:b1691, JW5274
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13973. ydiN.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 9CytoplasmicSequence analysis9
Transmembranei10 – 30HelicalSequence analysisAdd BLAST21
Topological domaini31 – 49PeriplasmicSequence analysisAdd BLAST19
Transmembranei50 – 70HelicalSequence analysisAdd BLAST21
Topological domaini71 – 78CytoplasmicSequence analysis8
Transmembranei79 – 99HelicalSequence analysisAdd BLAST21
Topological domaini100PeriplasmicSequence analysis1
Transmembranei101 – 121HelicalSequence analysisAdd BLAST21
Topological domaini122 – 136CytoplasmicSequence analysisAdd BLAST15
Transmembranei137 – 157HelicalSequence analysisAdd BLAST21
Topological domaini158 – 163PeriplasmicSequence analysis6
Transmembranei164 – 184HelicalSequence analysisAdd BLAST21
Topological domaini185 – 215CytoplasmicSequence analysisAdd BLAST31
Transmembranei216 – 236HelicalSequence analysisAdd BLAST21
Topological domaini237 – 251PeriplasmicSequence analysisAdd BLAST15
Transmembranei252 – 272HelicalSequence analysisAdd BLAST21
Topological domaini273 – 279CytoplasmicSequence analysis7
Transmembranei280 – 300HelicalSequence analysisAdd BLAST21
Topological domaini301 – 308PeriplasmicSequence analysis8
Transmembranei309 – 329HelicalSequence analysisAdd BLAST21
Topological domaini330 – 342CytoplasmicSequence analysisAdd BLAST13
Transmembranei343 – 363HelicalSequence analysisAdd BLAST21
Topological domaini364 – 369PeriplasmicSequence analysis6
Transmembranei370 – 390HelicalSequence analysisAdd BLAST21
Topological domaini391 – 421CytoplasmicSequence analysisAdd BLAST31

GO - Cellular componenti

  • integral component of plasma membrane Source: GO_Central
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001734051 – 421Inner membrane transport protein YdiNAdd BLAST421

Proteomic databases

PaxDbiP76198.
PRIDEiP76198.

Interactioni

Protein-protein interaction databases

BioGridi4259454. 165 interactors.
STRINGi511145.b1691.

Structurei

3D structure databases

ProteinModelPortaliP76198.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the major facilitator superfamily.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105EMV. Bacteria.
ENOG410XRAD. LUCA.
HOGENOMiHOG000062520.
InParanoidiP76198.
PhylomeDBiP76198.

Family and domain databases

CDDicd06174. MFS. 1 hit.
InterProiIPR011701. MFS.
IPR020846. MFS_dom.
[Graphical view]
PfamiPF07690. MFS_1. 1 hit.
[Graphical view]
SUPFAMiSSF103473. SSF103473. 1 hit.
PROSITEiPS50850. MFS. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P76198-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSQNKAFSTP FILAVLCIYF SYFLHGISVI TLAQNMSSLA EKFSTDNAGI
60 70 80 90 100
AYLISGIGLG RLISILFFGV ISDKFGRRAV ILMAVIMYLL FFFGIPACPN
110 120 130 140 150
LTLAYGLAVC VGIANSALDT GGYPALMECF PKASGSAVIL VKAMVSFGQM
160 170 180 190 200
FYPMLVSYML LNNIWYGYGL IIPGILFVLI TLMLLKSKFP SQLVDASVTN
210 220 230 240 250
ELPQMNSKPL VWLEGVSSVL FGVAAFSTFY VIVVWMPKYA MAFAGMSEAE
260 270 280 290 300
ALKTISYYSM GSLVCVFIFA ALLKKMVRPI WANVFNSALA TITAAIIYLY
310 320 330 340 350
PSPLVCNAGA FVIGFSAAGG ILQLGVSVMS EFFPKSKAKV TSIYMMMGGL
360 370 380 390 400
ANFVIPLITG YLSNIGLQYI IVLDFTFALL ALITAIIVFI RYYRVFIIPE
410 420
NDVRFGERKF CTRLNTIKHR G
Length:421
Mass (Da):46,080
Last modified:November 24, 2009 - v2
Checksum:i5344128BBF15D09C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74761.4.
AP009048 Genomic DNA. Translation: BAE76504.1.
PIRiC64927.
RefSeqiNP_416206.6. NC_000913.3.
WP_000081197.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74761; AAC74761; b1691.
BAE76504; BAE76504; BAE76504.
GeneIDi946198.
KEGGiecj:JW5274.
eco:b1691.
PATRICi32118688. VBIEscCol129921_1762.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74761.4.
AP009048 Genomic DNA. Translation: BAE76504.1.
PIRiC64927.
RefSeqiNP_416206.6. NC_000913.3.
WP_000081197.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76198.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259454. 165 interactors.
STRINGi511145.b1691.

Protein family/group databases

TCDBi2.A.1.15.13. the major facilitator superfamily (mfs).

Proteomic databases

PaxDbiP76198.
PRIDEiP76198.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74761; AAC74761; b1691.
BAE76504; BAE76504; BAE76504.
GeneIDi946198.
KEGGiecj:JW5274.
eco:b1691.
PATRICi32118688. VBIEscCol129921_1762.

Organism-specific databases

EchoBASEiEB3730.
EcoGeneiEG13973. ydiN.

Phylogenomic databases

eggNOGiENOG4105EMV. Bacteria.
ENOG410XRAD. LUCA.
HOGENOMiHOG000062520.
InParanoidiP76198.
PhylomeDBiP76198.

Enzyme and pathway databases

BioCyciEcoCyc:B1691-MONOMER.
ECOL316407:JW5274-MONOMER.

Miscellaneous databases

PROiP76198.

Family and domain databases

CDDicd06174. MFS. 1 hit.
InterProiIPR011701. MFS.
IPR020846. MFS_dom.
[Graphical view]
PfamiPF07690. MFS_1. 1 hit.
[Graphical view]
SUPFAMiSSF103473. SSF103473. 1 hit.
PROSITEiPS50850. MFS. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYDIN_ECOLI
AccessioniPrimary (citable) accession number: P76198
Secondary accession number(s): Q2MB52
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1999
Last sequence update: November 24, 2009
Last modified: November 2, 2016
This is version 114 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.