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Protein

Inner membrane transport protein YdiM

Gene

ydiM

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciEcoCyc:B1690-MONOMER.
ECOL316407:JW1680-MONOMER.

Protein family/group databases

TCDBi2.A.1.15.12. the major facilitator superfamily (mfs).

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane transport protein YdiM
Gene namesi
Name:ydiM
Ordered Locus Names:b1690, JW1680
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13972. ydiM.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 5PeriplasmicSequence analysis5
Transmembranei6 – 26HelicalSequence analysisAdd BLAST21
Topological domaini27 – 43CytoplasmicSequence analysisAdd BLAST17
Transmembranei44 – 64HelicalSequence analysisAdd BLAST21
Topological domaini65 – 84PeriplasmicSequence analysisAdd BLAST20
Transmembranei85 – 105HelicalSequence analysisAdd BLAST21
Topological domaini106 – 132CytoplasmicSequence analysisAdd BLAST27
Transmembranei133 – 153HelicalSequence analysisAdd BLAST21
Topological domaini154 – 157PeriplasmicSequence analysis4
Transmembranei158 – 178HelicalSequence analysisAdd BLAST21
Topological domaini179 – 206CytoplasmicSequence analysisAdd BLAST28
Transmembranei207 – 227HelicalSequence analysisAdd BLAST21
Topological domaini228 – 246PeriplasmicSequence analysisAdd BLAST19
Transmembranei247 – 267HelicalSequence analysisAdd BLAST21
Topological domaini268 – 273CytoplasmicSequence analysis6
Transmembranei274 – 294HelicalSequence analysisAdd BLAST21
Topological domaini295 – 296PeriplasmicSequence analysis2
Transmembranei297 – 317HelicalSequence analysisAdd BLAST21
Topological domaini318 – 336CytoplasmicSequence analysisAdd BLAST19
Transmembranei337 – 357HelicalSequence analysisAdd BLAST21
Topological domaini358 – 364PeriplasmicSequence analysis7
Transmembranei365 – 385HelicalSequence analysisAdd BLAST21
Topological domaini386 – 404CytoplasmicSequence analysisAdd BLAST19

GO - Cellular componenti

  • integral component of plasma membrane Source: GO_Central
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001734041 – 404Inner membrane transport protein YdiMAdd BLAST404

Proteomic databases

PaxDbiP76197.
PRIDEiP76197.

Interactioni

Protein-protein interaction databases

BioGridi4259455. 125 interactors.
DIPiDIP-11754N.
IntActiP76197. 1 interactor.
STRINGi511145.b1690.

Structurei

3D structure databases

ProteinModelPortaliP76197.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the major facilitator superfamily.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105EMV. Bacteria.
ENOG410XRAD. LUCA.
HOGENOMiHOG000062520.
InParanoidiP76197.
OMAiSIMWFDL.
PhylomeDBiP76197.

Family and domain databases

CDDicd06174. MFS. 1 hit.
InterProiIPR011701. MFS.
IPR020846. MFS_dom.
IPR005829. Sugar_transporter_CS.
[Graphical view]
PfamiPF07690. MFS_1. 1 hit.
[Graphical view]
SUPFAMiSSF103473. SSF103473. 1 hit.
PROSITEiPS50850. MFS. 1 hit.
PS00216. SUGAR_TRANSPORT_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P76197-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKNPYFPTAL GLYFNYLVHG MGVLLMSLNM ASLETLWQTN AAGVSIVISS
60 70 80 90 100
LGIGRLSVLL FAGLLSDRFG RRPFIMLGMC CYMAFFFGIL QTNNIIIAYV
110 120 130 140 150
FGFLAGMANS FLDAGTYPSL MEAFPRSPGT ANILIKAFVS SGQFLLPLII
160 170 180 190 200
SLLVWAELWF GWSFMIAAGI MFINALFLYR CTFPPHPGRR LPVIKKTTSS
210 220 230 240 250
TEHRCSIIDL ASYTLYGYIS MATFYLVSQW LAQYGQFVAG MSYTMSIKLL
260 270 280 290 300
SIYTVGSLLC VFITAPLIRN TVRPTTLLML YTFISFIALF TVCLHPTFYV
310 320 330 340 350
VIIFAFVIGF TSAGGVVQIG LTLMAERFPY AKGKATGIYY SAGSIATFTI
360 370 380 390 400
PLITAHLSQR SIADIMWFDT AIAAIGFLLA LFIGLRSRKK TRHHSLKENV

APGG
Length:404
Mass (Da):44,608
Last modified:February 1, 1997 - v1
Checksum:iA00E5553BEC9E440
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74760.1.
AP009048 Genomic DNA. Translation: BAE76503.1.
PIRiB64927.
RefSeqiNP_416205.1. NC_000913.3.
WP_000795537.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74760; AAC74760; b1690.
BAE76503; BAE76503; BAE76503.
GeneIDi946196.
KEGGiecj:JW1680.
eco:b1690.
PATRICi32118686. VBIEscCol129921_1761.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74760.1.
AP009048 Genomic DNA. Translation: BAE76503.1.
PIRiB64927.
RefSeqiNP_416205.1. NC_000913.3.
WP_000795537.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76197.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259455. 125 interactors.
DIPiDIP-11754N.
IntActiP76197. 1 interactor.
STRINGi511145.b1690.

Protein family/group databases

TCDBi2.A.1.15.12. the major facilitator superfamily (mfs).

Proteomic databases

PaxDbiP76197.
PRIDEiP76197.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74760; AAC74760; b1690.
BAE76503; BAE76503; BAE76503.
GeneIDi946196.
KEGGiecj:JW1680.
eco:b1690.
PATRICi32118686. VBIEscCol129921_1761.

Organism-specific databases

EchoBASEiEB3729.
EcoGeneiEG13972. ydiM.

Phylogenomic databases

eggNOGiENOG4105EMV. Bacteria.
ENOG410XRAD. LUCA.
HOGENOMiHOG000062520.
InParanoidiP76197.
OMAiSIMWFDL.
PhylomeDBiP76197.

Enzyme and pathway databases

BioCyciEcoCyc:B1690-MONOMER.
ECOL316407:JW1680-MONOMER.

Miscellaneous databases

PROiP76197.

Family and domain databases

CDDicd06174. MFS. 1 hit.
InterProiIPR011701. MFS.
IPR020846. MFS_dom.
IPR005829. Sugar_transporter_CS.
[Graphical view]
PfamiPF07690. MFS_1. 1 hit.
[Graphical view]
SUPFAMiSSF103473. SSF103473. 1 hit.
PROSITEiPS50850. MFS. 1 hit.
PS00216. SUGAR_TRANSPORT_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYDIM_ECOLI
AccessioniPrimary (citable) accession number: P76197
Secondary accession number(s): Q2MB53
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1999
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 119 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.