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Protein

Uncharacterized protein YdhJ

Gene

ydhJ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G6884-MONOMER.
ECOL316407:JW1636-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YdhJ
Gene namesi
Name:ydhJ
Ordered Locus Names:b1644, JW1636
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13944. ydhJ.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei6 – 2621HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 285285Uncharacterized protein YdhJPRO_0000201894Add
BLAST

Proteomic databases

PaxDbiP76185.

Interactioni

Protein-protein interaction databases

BioGridi4261300. 380 interactions.
DIPiDIP-11733N.
IntActiP76185. 1 interaction.
STRINGi511145.b1644.

Structurei

3D structure databases

ProteinModelPortaliP76185.
SMRiP76185. Positions 38-274.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105Y49. Bacteria.
COG1566. LUCA.
HOGENOMiHOG000112073.
InParanoidiP76185.
OMAiQLVPVRF.
OrthoDBiEOG6HXJ2X.
PhylomeDBiP76185.

Family and domain databases

InterProiIPR032317. HlyD_D23.
IPR006143. RND_pump_MFP.
[Graphical view]
PfamiPF00529. HlyD. 1 hit.
PF16576. HlyD_D23. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01730. RND_mfp. 1 hit.

Sequencei

Sequence statusi: Complete.

P76185-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSIKTIKYFS TIIVAVVAVL AGWWLWNYYM QSPWTRDGKI RAEQVSITPQ
60 70 80 90 100
VSGRIVELNI KDNQLVNAGD LLLTIDKTPF QIAELNAQAQ LAKAQSDLAK
110 120 130 140 150
ANNEANRRRH LSQNFISAEE LDTANLNVKA MQASVDAAQA TLKQAQWQLA
160 170 180 190 200
QTEIRAPVSG WVTNLTTRIG DYADTGKPLF ALVDSHSFYV IGYFEETKLR
210 220 230 240 250
HIREGAPAQI TLYSDNKTLQ GHVSSIGRAI YDQSVESDSS LIPDVKPNVP
260 270 280
WVRLAQRVPV RFALDKVPGD VTLVSGTTCS IAVGQ
Length:285
Mass (Da):31,496
Last modified:July 11, 2001 - v2
Checksum:iFC3032D13764A869
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti284 – 2852GQ → VNNERIVMVLAQFALVQGHA GAMALCVTQYHCHVSGADGC LLFKSG no nucleotide entry (PubMed:9097039).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74716.2.
AP009048 Genomic DNA. Translation: BAA15404.2.
PIRiF64921.
RefSeqiNP_416161.4. NC_000913.3.
WP_001300356.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74716; AAC74716; b1644.
BAA15404; BAA15404; BAA15404.
GeneIDi946499.
KEGGiecj:JW1636.
eco:b1644.
PATRICi32118590. VBIEscCol129921_1715.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74716.2.
AP009048 Genomic DNA. Translation: BAA15404.2.
PIRiF64921.
RefSeqiNP_416161.4. NC_000913.3.
WP_001300356.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76185.
SMRiP76185. Positions 38-274.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261300. 380 interactions.
DIPiDIP-11733N.
IntActiP76185. 1 interaction.
STRINGi511145.b1644.

Proteomic databases

PaxDbiP76185.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74716; AAC74716; b1644.
BAA15404; BAA15404; BAA15404.
GeneIDi946499.
KEGGiecj:JW1636.
eco:b1644.
PATRICi32118590. VBIEscCol129921_1715.

Organism-specific databases

EchoBASEiEB3702.
EcoGeneiEG13944. ydhJ.

Phylogenomic databases

eggNOGiENOG4105Y49. Bacteria.
COG1566. LUCA.
HOGENOMiHOG000112073.
InParanoidiP76185.
OMAiQLVPVRF.
OrthoDBiEOG6HXJ2X.
PhylomeDBiP76185.

Enzyme and pathway databases

BioCyciEcoCyc:G6884-MONOMER.
ECOL316407:JW1636-MONOMER.

Miscellaneous databases

PROiP76185.

Family and domain databases

InterProiIPR032317. HlyD_D23.
IPR006143. RND_pump_MFP.
[Graphical view]
PfamiPF00529. HlyD. 1 hit.
PF16576. HlyD_D23. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01730. RND_mfp. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], SEQUENCE REVISION TO 284-285.
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYDHJ_ECOLI
AccessioniPrimary (citable) accession number: P76185
Secondary accession number(s): P76893
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: July 11, 2001
Last modified: May 11, 2016
This is version 119 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.