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Protein

Inner membrane protein YdgK

Gene

ydgK

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6870-MONOMER.
ECOL316407:JW1618-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YdgK
Gene namesi
Name:ydgK
Ordered Locus Names:b1626, JW1618
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13932. ydgK.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 1212CytoplasmicSequence analysisAdd
BLAST
Transmembranei13 – 3321HelicalSequence analysisAdd
BLAST
Topological domaini34 – 5926PeriplasmicSequence analysisAdd
BLAST
Transmembranei60 – 8021HelicalSequence analysisAdd
BLAST
Topological domaini81 – 899CytoplasmicSequence analysis
Transmembranei90 – 11021HelicalSequence analysisAdd
BLAST
Topological domaini111 – 1122PeriplasmicSequence analysis
Transmembranei113 – 13321HelicalSequence analysisAdd
BLAST
Topological domaini134 – 14613CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 146146Inner membrane protein YdgKPRO_0000168973Add
BLAST

Proteomic databases

PaxDbiP76180.

Interactioni

Protein-protein interaction databases

BioGridi4259633. 49 interactions.
IntActiP76180. 1 interaction.
STRINGi511145.b1626.

Structurei

3D structure databases

ProteinModelPortaliP76180.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To Synechocystis PCC 6803 sll0481.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105M9B. Bacteria.
ENOG4111W7W. LUCA.
HOGENOMiHOG000120897.
OMAiMWCFTLW.

Family and domain databases

InterProiIPR019690. DUF2569.
[Graphical view]
PfamiPF10754. DUF2569. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P76180-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTTTTPQRIG GWLLGPLAWL LVALLSTTLA LLLYTAALSS PQTFQTLGGQ
60 70 80 90 100
ALTTQILWGV SFITAIALWY YTLWLTIAFF KRRRCVPKHY IIWLLISVLL
110 120 130 140
AVKAFAFSPV EDGIAVRQLL FTLLATALIV PYFKRSSRVK ATFVNP
Length:146
Mass (Da):16,319
Last modified:December 15, 1998 - v2
Checksum:i16EBD8FEBFA5E377
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74698.2.
AP009048 Genomic DNA. Translation: BAE76485.1.
PIRiD64919.
RefSeqiNP_416143.2. NC_000913.3.
WP_001310854.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74698; AAC74698; b1626.
BAE76485; BAE76485; BAE76485.
GeneIDi946154.
KEGGiecj:JW1618.
eco:b1626.
PATRICi32118554. VBIEscCol129921_1697.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74698.2.
AP009048 Genomic DNA. Translation: BAE76485.1.
PIRiD64919.
RefSeqiNP_416143.2. NC_000913.3.
WP_001310854.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76180.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259633. 49 interactions.
IntActiP76180. 1 interaction.
STRINGi511145.b1626.

Proteomic databases

PaxDbiP76180.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74698; AAC74698; b1626.
BAE76485; BAE76485; BAE76485.
GeneIDi946154.
KEGGiecj:JW1618.
eco:b1626.
PATRICi32118554. VBIEscCol129921_1697.

Organism-specific databases

EchoBASEiEB3691.
EcoGeneiEG13932. ydgK.

Phylogenomic databases

eggNOGiENOG4105M9B. Bacteria.
ENOG4111W7W. LUCA.
HOGENOMiHOG000120897.
OMAiMWCFTLW.

Enzyme and pathway databases

BioCyciEcoCyc:G6870-MONOMER.
ECOL316407:JW1618-MONOMER.

Miscellaneous databases

PROiP76180.

Family and domain databases

InterProiIPR019690. DUF2569.
[Graphical view]
PfamiPF10754. DUF2569. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYDGK_ECOLI
AccessioniPrimary (citable) accession number: P76180
Secondary accession number(s): Q2MB71
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: December 15, 1998
Last modified: September 7, 2016
This is version 98 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.