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Protein

Protein YdgH

Gene

ydgH

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6860-MONOMER.
ECOL316407:JW1596-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YdgH
Gene namesi
Name:ydgH
Ordered Locus Names:b1604, JW1596
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13929. ydgH.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1919Sequence analysisAdd
BLAST
Chaini20 – 314295Protein YdgHPRO_0000013850Add
BLAST

Proteomic databases

EPDiP76177.
PaxDbiP76177.
PRIDEiP76177.

Interactioni

Protein-protein interaction databases

DIPiDIP-11716N.
IntActiP76177. 4 interactions.
STRINGi511145.b1604.

Structurei

3D structure databases

ProteinModelPortaliP76177.
SMRiP76177. Positions 21-91, 247-314.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To E.coli YjfY.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105C5D. Bacteria.
ENOG410XNQU. LUCA.
HOGENOMiHOG000120852.
OMAiFYIVRQV.

Family and domain databases

Gene3Di3.30.1660.10. 3 hits.
InterProiIPR025543. Dodecin-like.
IPR010854. DUF1471.
IPR025539. YdgH.
[Graphical view]
PfamiPF07338. DUF1471. 3 hits.
[Graphical view]
PIRSFiPIRSF014774. YdgH. 1 hit.
SUPFAMiSSF159871. SSF159871. 3 hits.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P76177-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLKNTLLAS ALLSAMAFSV NAATELTPEQ AAAVKPFDRV VVTGRFNAIG
60 70 80 90 100
EAVKAVSRRA DKEGAASFYV VDTSDFGNSG NWRVVADLYK ADAEKAEETS
110 120 130 140 150
NRVINGVVEL PKDQAVLIEP FDTVTVQGFY RSQPEVNDAI TKAAKAKGAY
160 170 180 190 200
SFYIVRQIDA NQGGNQRITA FIYKKDAKKR IVQSPDVIPA DSEAGRAALA
210 220 230 240 250
AGGEAAKKVE IPGVATTASP SSEVGRFFET QSSKGGRYTV TLPDGTKVEE
260 270 280 290 300
LNKATAAMMV PFDSIKFSGN YGNMTEVSYQ VAKRAAKKGA KYYHITRQWQ
310
ERGNNLTVSA DLYK
Length:314
Mass (Da):33,903
Last modified:February 1, 1997 - v1
Checksum:iAFD788B9CC41971A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74676.1.
AP009048 Genomic DNA. Translation: BAE76481.1.
PIRiF64916.
RefSeqiNP_416121.1. NC_000913.3.
WP_000769303.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74676; AAC74676; b1604.
BAE76481; BAE76481; BAE76481.
GeneIDi945117.
KEGGiecj:JW1596.
eco:b1604.
PATRICi32118510. VBIEscCol129921_1675.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74676.1.
AP009048 Genomic DNA. Translation: BAE76481.1.
PIRiF64916.
RefSeqiNP_416121.1. NC_000913.3.
WP_000769303.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76177.
SMRiP76177. Positions 21-91, 247-314.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-11716N.
IntActiP76177. 4 interactions.
STRINGi511145.b1604.

Proteomic databases

EPDiP76177.
PaxDbiP76177.
PRIDEiP76177.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74676; AAC74676; b1604.
BAE76481; BAE76481; BAE76481.
GeneIDi945117.
KEGGiecj:JW1596.
eco:b1604.
PATRICi32118510. VBIEscCol129921_1675.

Organism-specific databases

EchoBASEiEB3688.
EcoGeneiEG13929. ydgH.

Phylogenomic databases

eggNOGiENOG4105C5D. Bacteria.
ENOG410XNQU. LUCA.
HOGENOMiHOG000120852.
OMAiFYIVRQV.

Enzyme and pathway databases

BioCyciEcoCyc:G6860-MONOMER.
ECOL316407:JW1596-MONOMER.

Miscellaneous databases

PROiP76177.

Family and domain databases

Gene3Di3.30.1660.10. 3 hits.
InterProiIPR025543. Dodecin-like.
IPR010854. DUF1471.
IPR025539. YdgH.
[Graphical view]
PfamiPF07338. DUF1471. 3 hits.
[Graphical view]
PIRSFiPIRSF014774. YdgH. 1 hit.
SUPFAMiSSF159871. SSF159871. 3 hits.
ProtoNetiSearch...

Entry informationi

Entry nameiYDGH_ECOLI
AccessioniPrimary (citable) accession number: P76177
Secondary accession number(s): Q2MB75
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: September 7, 2016
This is version 99 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.