Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Uncharacterized serine protease YdgD

Gene

ydgD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei84 – 841Charge relay systemBy similarity
Active sitei223 – 2231Charge relay systemBy similarity

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protease, Serine protease

Enzyme and pathway databases

BioCyciEcoCyc:G6856-MONOMER.
ECOL316407:JW1590-MONOMER.

Protein family/group databases

MEROPSiS01.260.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized serine protease YdgD (EC:3.4.21.-)
Gene namesi
Name:ydgD
Ordered Locus Names:b1598, JW1590
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13925. ydgD.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2121Sequence analysisAdd
BLAST
Chaini22 – 273252Uncharacterized serine protease YdgDPRO_0000026904Add
BLAST

Proteomic databases

PaxDbiP76176.

Interactioni

Protein-protein interaction databases

BioGridi4259123. 11 interactions.
DIPiDIP-11712N.
STRINGi511145.b1598.

Structurei

3D structure databases

ProteinModelPortaliP76176.
SMRiP76176. Positions 212-242.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the peptidase S1B family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105CVW. Bacteria.
COG3591. LUCA.
HOGENOMiHOG000120841.
InParanoidiP76176.
KOiK04775.
OMAiWQAIGQL.

Family and domain databases

InterProiIPR009003. Peptidase_S1_PA.
IPR008256. Peptidase_S1B.
IPR001254. Trypsin_dom.
IPR018114. TRYPSIN_HIS.
IPR033116. TRYPSIN_SER.
[Graphical view]
PfamiPF00089. Trypsin. 1 hit.
[Graphical view]
PRINTSiPR00839. V8PROTEASE.
SUPFAMiSSF50494. SSF50494. 2 hits.
PROSITEiPS00134. TRYPSIN_HIS. 1 hit.
PS00135. TRYPSIN_SER. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P76176-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRTTIAVVLG AISLTSAFVF ADKPDVARSA NDEVSTLFFG HDDRVPVNDT
60 70 80 90 100
TQSPWDAVGQ LETASGNLCT ATLIAPNLAL TAGHCLLTPP KGKADKAVAL
110 120 130 140 150
RFVSNKGLWR YEIHDIEGRV DPTLGKRLKA DGDGWIVPPA AAPWDFGLIV
160 170 180 190 200
LRNPPSGITP LPLFEGDKAA LTAALKAAGR KVTQAGYPED HLDTLYSHQN
210 220 230 240 250
CEVTGWAQTS VMSHQCDTLP GDSGSPLMLH TDDGWQLIGV QSSAPAAKDR
260 270
WRADNRAISV TGFRDKLDQL SQK
Length:273
Mass (Da):29,277
Last modified:February 1, 1997 - v1
Checksum:iC8FCD018A59DBC62
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74670.1.
AP009048 Genomic DNA. Translation: BAE76480.1.
PIRiH64915.
RefSeqiNP_416115.1. NC_000913.3.
WP_001260865.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74670; AAC74670; b1598.
BAE76480; BAE76480; BAE76480.
GeneIDi946436.
KEGGiecj:JW1590.
eco:b1598.
PATRICi32118498. VBIEscCol129921_1669.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74670.1.
AP009048 Genomic DNA. Translation: BAE76480.1.
PIRiH64915.
RefSeqiNP_416115.1. NC_000913.3.
WP_001260865.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76176.
SMRiP76176. Positions 212-242.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259123. 11 interactions.
DIPiDIP-11712N.
STRINGi511145.b1598.

Protein family/group databases

MEROPSiS01.260.

Proteomic databases

PaxDbiP76176.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74670; AAC74670; b1598.
BAE76480; BAE76480; BAE76480.
GeneIDi946436.
KEGGiecj:JW1590.
eco:b1598.
PATRICi32118498. VBIEscCol129921_1669.

Organism-specific databases

EchoBASEiEB3684.
EcoGeneiEG13925. ydgD.

Phylogenomic databases

eggNOGiENOG4105CVW. Bacteria.
COG3591. LUCA.
HOGENOMiHOG000120841.
InParanoidiP76176.
KOiK04775.
OMAiWQAIGQL.

Enzyme and pathway databases

BioCyciEcoCyc:G6856-MONOMER.
ECOL316407:JW1590-MONOMER.

Miscellaneous databases

PROiP76176.

Family and domain databases

InterProiIPR009003. Peptidase_S1_PA.
IPR008256. Peptidase_S1B.
IPR001254. Trypsin_dom.
IPR018114. TRYPSIN_HIS.
IPR033116. TRYPSIN_SER.
[Graphical view]
PfamiPF00089. Trypsin. 1 hit.
[Graphical view]
PRINTSiPR00839. V8PROTEASE.
SUPFAMiSSF50494. SSF50494. 2 hits.
PROSITEiPS00134. TRYPSIN_HIS. 1 hit.
PS00135. TRYPSIN_SER. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYDGD_ECOLI
AccessioniPrimary (citable) accession number: P76176
Secondary accession number(s): Q2MB76
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 1, 2001
Last sequence update: February 1, 1997
Last modified: September 7, 2016
This is version 114 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. Peptidase families
    Classification of peptidase families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.