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Protein

Uncharacterized protein YnfD

Gene

ynfD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6844-MONOMER.
ECOL316407:JW5259-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YnfD
Gene namesi
Name:ynfD
Ordered Locus Names:b1586, JW5259
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000000318: Chromosome, UP000000625: Chromosome

Organism-specific databases

EcoGeneiEG13842. ynfD.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 21211 PublicationAdd
BLAST
Chaini22 – 10180Uncharacterized protein YnfDPRO_0000013849Add
BLAST

Expressioni

Gene expression databases

GenevestigatoriP76172.

Interactioni

Protein-protein interaction databases

DIPiDIP-12764N.
IntActiP76172. 1 interaction.
STRINGi511145.b1586.

Structurei

3D structure databases

ProteinModelPortaliP76172.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiNOG43710.
HOGENOMiHOG000120817.
InParanoidiP76172.
OMAiNIVPNDQ.
OrthoDBiEOG6GBMFX.

Family and domain databases

InterProiIPR010595. DUF1161.
[Graphical view]
PfamiPF06649. DUF1161. 1 hit.
[Graphical view]
ProDomiPD336997. DUF1161. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P76172-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLSTCCAAL LLALASPAVL AAPGSCERIQ SDISQRIINN GVPESSFTLS
60 70 80 90 100
IVPNDQVDQP DSQVVGHCAN DTHKILYTRT TSGNVSAPAQ SSQDGAPAEP

Q
Length:101
Mass (Da):10,477
Last modified:December 12, 2006 - v2
Checksum:iA03332ECCC21FFAA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74658.2.
AP009048 Genomic DNA. Translation: BAE76479.1.
PIRiD64914.
RefSeqiNP_416103.2. NC_000913.3.
YP_489849.1. NC_007779.1.

Genome annotation databases

EnsemblBacteriaiAAC74658; AAC74658; b1586.
BAE76479; BAE76479; BAE76479.
GeneIDi12932520.
946133.
KEGGiecj:Y75_p1562.
eco:b1586.
PATRICi32118474. VBIEscCol129921_1657.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74658.2.
AP009048 Genomic DNA. Translation: BAE76479.1.
PIRiD64914.
RefSeqiNP_416103.2. NC_000913.3.
YP_489849.1. NC_007779.1.

3D structure databases

ProteinModelPortaliP76172.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-12764N.
IntActiP76172. 1 interaction.
STRINGi511145.b1586.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74658; AAC74658; b1586.
BAE76479; BAE76479; BAE76479.
GeneIDi12932520.
946133.
KEGGiecj:Y75_p1562.
eco:b1586.
PATRICi32118474. VBIEscCol129921_1657.

Organism-specific databases

EchoBASEiEB3603.
EcoGeneiEG13842. ynfD.

Phylogenomic databases

eggNOGiNOG43710.
HOGENOMiHOG000120817.
InParanoidiP76172.
OMAiNIVPNDQ.
OrthoDBiEOG6GBMFX.

Enzyme and pathway databases

BioCyciEcoCyc:G6844-MONOMER.
ECOL316407:JW5259-MONOMER.

Miscellaneous databases

PROiP76172.

Gene expression databases

GenevestigatoriP76172.

Family and domain databases

InterProiIPR010595. DUF1161.
[Graphical view]
PfamiPF06649. DUF1161. 1 hit.
[Graphical view]
ProDomiPD336997. DUF1161. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. "Small genes/gene-products in Escherichia coli K-12."
    Wasinger V.C., Humphery-Smith I.
    FEMS Microbiol. Lett. 169:375-382(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 22-33.

Entry informationi

Entry nameiYNFD_ECOLI
AccessioniPrimary (citable) accession number: P76172
Secondary accession number(s): Q2MB77
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: December 12, 2006
Last modified: January 7, 2015
This is version 87 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.