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P76172 (YNFD_ECOLI) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 84. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized protein YnfD
Gene names
Name:ynfD
Ordered Locus Names:b1586, JW5259
OrganismEscherichia coli (strain K12) [Reference proteome] [HAMAP]
Taxonomic identifier83333 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Protein attributes

Sequence length101 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

Ontologies

Keywords
   DomainSignal
   Technical termComplete proteome
Direct protein sequencing
Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2121 Ref.3
Chain22 – 10180Uncharacterized protein YnfD
PRO_0000013849

Sequences

Sequence LengthMass (Da)Tools
P76172 [UniParc].

Last modified December 12, 2006. Version 2.
Checksum: A03332ECCC21FFAA

FASTA10110,477
        10         20         30         40         50         60 
MKLSTCCAAL LLALASPAVL AAPGSCERIQ SDISQRIINN GVPESSFTLS IVPNDQVDQP 

        70         80         90        100 
DSQVVGHCAN DTHKILYTRT TSGNVSAPAQ SSQDGAPAEP Q 

« Hide

References

« Hide 'large scale' references
[1]"The complete genome sequence of Escherichia coli K-12."
Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y.
Science 277:1453-1462(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / MG1655 / ATCC 47076.
[2]"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[3]"Small genes/gene-products in Escherichia coli K-12."
Wasinger V.C., Humphery-Smith I.
FEMS Microbiol. Lett. 169:375-382(1998) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 22-33.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U00096 Genomic DNA. Translation: AAC74658.2.
AP009048 Genomic DNA. Translation: BAE76479.1.
PIRD64914.
RefSeqNP_416103.2. NC_000913.3.
YP_489849.1. NC_007779.1.

3D structure databases

ProteinModelPortalP76172.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

DIPDIP-12764N.
IntActP76172. 1 interaction.
STRING511145.b1586.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAC74658; AAC74658; b1586.
BAE76479; BAE76479; BAE76479.
GeneID12932520.
946133.
KEGGecj:Y75_p1562.
eco:b1586.
PATRIC32118474. VBIEscCol129921_1657.

Organism-specific databases

EchoBASEEB3603.
EcoGeneEG13842. ynfD.

Phylogenomic databases

eggNOGNOG43710.
HOGENOMHOG000120817.
OMADQPDAQV.
OrthoDBEOG6GBMFX.

Enzyme and pathway databases

BioCycEcoCyc:G6844-MONOMER.
ECOL316407:JW5259-MONOMER.

Gene expression databases

GenevestigatorP76172.

Family and domain databases

InterProIPR010595. DUF1161.
[Graphical view]
PfamPF06649. DUF1161. 1 hit.
[Graphical view]
ProDomPD336997. DUF1161. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetSearch...

Other

PROP76172.

Entry information

Entry nameYNFD_ECOLI
AccessionPrimary (citable) accession number: P76172
Secondary accession number(s): Q2MB77
Entry history
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: December 12, 2006
Last modified: May 14, 2014
This is version 84 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Escherichia coli

Escherichia coli (strain K12): entries and cross-references to EcoGene