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Protein

UPF0482 protein YnfB

Gene

ynfB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6841-MONOMER.
ECOL316407:JW1575-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0482 protein YnfBUniRule annotation
Gene namesi
Name:ynfBUniRule annotation
Ordered Locus Names:b1583, JW1575
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13840. ynfB.

Subcellular locationi

GO - Cellular componenti

  • cell outer membrane Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2828UniRule annotationAdd
BLAST
Chaini29 – 11385UPF0482 protein YnfBPRO_0000013848Add
BLAST

Proteomic databases

PaxDbiP76170.
PRIDEiP76170.

Interactioni

Protein-protein interaction databases

BioGridi4260818. 21 interactions.
DIPiDIP-12762N.
IntActiP76170. 3 interactions.
STRINGi511145.b1583.

Structurei

3D structure databases

ProteinModelPortaliP76170.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0482 family.UniRule annotation

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105M5Q. Bacteria.
ENOG4111VZ1. LUCA.
HOGENOMiHOG000059285.
OMAiDKEQWND.
OrthoDBiEOG65N1D7.

Family and domain databases

HAMAPiMF_01581. UPF0482.
InterProiIPR009700. DUF1283.
[Graphical view]
PfamiPF06932. DUF1283. 1 hit.
[Graphical view]
ProDomiPD073251. DUF1283. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P76170-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKITLSKRIG LLAILLPCAL ALSTTVHAET NKLVIESGDS AQSRQHAAME
60 70 80 90 100
KEQWNDTRNL RQKVNKRTEK EWDKADAAFD NRDKCEQSAN INAYWEPNTL
110
RCLDRRTGRV ITP
Length:113
Mass (Da):12,909
Last modified:February 1, 1997 - v1
Checksum:i54CD449B384A7418
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74655.1.
AP009048 Genomic DNA. Translation: BAE76477.1.
PIRiA64914.
RefSeqiNP_416100.1. NC_000913.3.
WP_000705211.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74655; AAC74655; b1583.
BAE76477; BAE76477; BAE76477.
GeneIDi946119.
KEGGiecj:JW1575.
eco:b1583.
PATRICi32118468. VBIEscCol129921_1654.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74655.1.
AP009048 Genomic DNA. Translation: BAE76477.1.
PIRiA64914.
RefSeqiNP_416100.1. NC_000913.3.
WP_000705211.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76170.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260818. 21 interactions.
DIPiDIP-12762N.
IntActiP76170. 3 interactions.
STRINGi511145.b1583.

Proteomic databases

PaxDbiP76170.
PRIDEiP76170.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74655; AAC74655; b1583.
BAE76477; BAE76477; BAE76477.
GeneIDi946119.
KEGGiecj:JW1575.
eco:b1583.
PATRICi32118468. VBIEscCol129921_1654.

Organism-specific databases

EchoBASEiEB3601.
EcoGeneiEG13840. ynfB.

Phylogenomic databases

eggNOGiENOG4105M5Q. Bacteria.
ENOG4111VZ1. LUCA.
HOGENOMiHOG000059285.
OMAiDKEQWND.
OrthoDBiEOG65N1D7.

Enzyme and pathway databases

BioCyciEcoCyc:G6841-MONOMER.
ECOL316407:JW1575-MONOMER.

Miscellaneous databases

PROiP76170.

Family and domain databases

HAMAPiMF_01581. UPF0482.
InterProiIPR009700. DUF1283.
[Graphical view]
PfamiPF06932. DUF1283. 1 hit.
[Graphical view]
ProDomiPD073251. DUF1283. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYNFB_ECOLI
AccessioniPrimary (citable) accession number: P76170
Secondary accession number(s): Q2MB79
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: July 6, 2016
This is version 96 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.