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Protein

Uncharacterized protein ydfW in Qin prophage region

Gene

ydfW

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein uncertaini

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6834-MONOMER.
ECOL316407:JW1559-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein ydfW in Qin prophage region
Gene namesi
Name:ydfW
Ordered Locus Names:b1567, JW1559
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13835. ydfW.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7575Uncharacterized protein ydfW in Qin prophage regionPRO_0000168961Add
BLAST

Interactioni

Protein-protein interaction databases

BioGridi4260699. 97 interactions.
IntActiP76164. 2 interactions.

Structurei

3D structure databases

ProteinModelPortaliP76164.
ModBaseiSearch...
MobiDBiSearch...

Sequencei

Sequence statusi: Complete.

P76164-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMKRVSMNEW IMPVLIYAQN TMLNLKLTIP GLRAERKVIS KLSPRSYLKR
60 70
SLIPIKKIET KIDSVECISI HRVDS
Length:75
Mass (Da):8,727
Last modified:June 26, 2007 - v2
Checksum:iB39AE95C085B1708
GO

Sequence cautioni

The sequence BAE76473.1 differs from that shown. Reason: Erroneous translation. Wrong choice of frame.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAE76473.1. Sequence problems.
PIRiB64912.
RefSeqiWP_000977989.1. NZ_CP014272.1.

Genome annotation databases

EnsemblBacteriaiBAE76473; BAE76473; BAE76473.
KEGGiecj:JW1559.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAE76473.1. Sequence problems.
PIRiB64912.
RefSeqiWP_000977989.1. NZ_CP014272.1.

3D structure databases

ProteinModelPortaliP76164.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260699. 97 interactions.
IntActiP76164. 2 interactions.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAE76473; BAE76473; BAE76473.
KEGGiecj:JW1559.

Organism-specific databases

EchoBASEiEB3596.
EcoGeneiEG13835. ydfW.

Enzyme and pathway databases

BioCyciEcoCyc:G6834-MONOMER.
ECOL316407:JW1559-MONOMER.

Family and domain databases

ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. Plunkett G. III
    Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: SEQUENCE REVISION.
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYDFW_ECOLI
AccessioniPrimary (citable) accession number: P76164
Secondary accession number(s): Q2MB83
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: June 26, 2007
Last modified: May 11, 2016
This is version 77 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Could be the product of a pseudogene.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.