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Protein

Uncharacterized protein YdfU

Gene

ydfU

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6831-MONOMER.
ECOL316407:JW5909-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YdfU
Gene namesi
Name:ydfU
Ordered Locus Names:b1560, JW5909
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13833. ydfU.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002013231 – 349Uncharacterized protein YdfUAdd BLAST349

Proteomic databases

PaxDbiP76162.
PRIDEiP76162.

Interactioni

Protein-protein interaction databases

BioGridi4259128. 77 interactors.
DIPiDIP-48000N.
IntActiP76162. 2 interactors.
STRINGi511145.b1560.

Structurei

3D structure databases

ProteinModelPortaliP76162.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4108MXB. Bacteria.
ENOG410ZRYP. LUCA.
HOGENOMiHOG000119975.

Family and domain databases

InterProiIPR010373. DUF968.
IPR003615. HNH_nuc.
[Graphical view]
PfamiPF06147. DUF968. 1 hit.
[Graphical view]
SMARTiSM00507. HNHc. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P76162-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRVLLRPVLV PELGLVVLKP GRESIQIFHN PRVLVEPEPK SMRNLPSGVV
60 70 80 90 100
PAVRQPLAED KTLLPFFSNE RVIRAAGGVG ALSDWLLRHV TSCQWPNGDY
110 120 130 140 150
HHTETVIHRY GTGAMVLCWH CDNQLRDQTS ESLELLAQQN LTAWVIDVIR
160 170 180 190 200
HAISGTQERE LSLAELSWWA VCNQVVDALP EAVSRRSLGL PAEKICSVYR
210 220 230 240 250
ESDIVPGELT ATSILKQRTK NLAPLPYAHQ QQKSPQEKTV VSITVDPESP
260 270 280 290 300
ESFMKLPKRR RWVKEKYTRW VKTQPCACCG MPADDPHHLI GHGQGGMGTK
310 320 330 340
AHDLFVLPLC RKHHNELHTD TVAFEDKYGS QLELIFRFID RALAIGVLA
Length:349
Mass (Da):39,260
Last modified:November 24, 2009 - v4
Checksum:iCBC4A01CAB8E2167
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74633.4.
AP009048 Genomic DNA. Translation: BAA15259.1.
PIRiC64911.
RefSeqiNP_416078.4. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiAAC74633; AAC74633; b1560.
BAA15259; BAA15259; BAA15259.
GeneIDi946108.
KEGGiecj:JW5909.
eco:b1560.
PATRICi32118422. VBIEscCol129921_1631.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74633.4.
AP009048 Genomic DNA. Translation: BAA15259.1.
PIRiC64911.
RefSeqiNP_416078.4. NC_000913.3.

3D structure databases

ProteinModelPortaliP76162.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259128. 77 interactors.
DIPiDIP-48000N.
IntActiP76162. 2 interactors.
STRINGi511145.b1560.

Proteomic databases

PaxDbiP76162.
PRIDEiP76162.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74633; AAC74633; b1560.
BAA15259; BAA15259; BAA15259.
GeneIDi946108.
KEGGiecj:JW5909.
eco:b1560.
PATRICi32118422. VBIEscCol129921_1631.

Organism-specific databases

EchoBASEiEB3594.
EcoGeneiEG13833. ydfU.

Phylogenomic databases

eggNOGiENOG4108MXB. Bacteria.
ENOG410ZRYP. LUCA.
HOGENOMiHOG000119975.

Enzyme and pathway databases

BioCyciEcoCyc:G6831-MONOMER.
ECOL316407:JW5909-MONOMER.

Miscellaneous databases

PROiP76162.

Family and domain databases

InterProiIPR010373. DUF968.
IPR003615. HNH_nuc.
[Graphical view]
PfamiPF06147. DUF968. 1 hit.
[Graphical view]
SMARTiSM00507. HNHc. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYDFU_ECOLI
AccessioniPrimary (citable) accession number: P76162
Secondary accession number(s): P77553
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 27, 2002
Last sequence update: November 24, 2009
Last modified: November 2, 2016
This is version 89 of the entry and version 4 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.