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Protein

Uncharacterized protein YdfO

Gene

ydfO

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6822-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YdfO
Gene namesi
Name:ydfO
Ordered Locus Names:b1549, JW5252
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13827 ydfO

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001689581 – 136Uncharacterized protein YdfOAdd BLAST136

Proteomic databases

PaxDbiP76156
PRIDEiP76156

Interactioni

Protein-protein interaction databases

BioGridi4260250, 11 interactors

Structurei

Secondary structure

1136
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi3 – 17Combined sources15
Helixi21 – 30Combined sources10
Beta strandi32 – 38Combined sources7
Turni39 – 41Combined sources3
Beta strandi42 – 47Combined sources6
Beta strandi49 – 51Combined sources3
Beta strandi53 – 57Combined sources5
Helixi71 – 83Combined sources13
Helixi88 – 97Combined sources10
Beta strandi102 – 106Combined sources5
Turni107 – 110Combined sources4
Beta strandi111 – 115Combined sources5
Beta strandi121 – 126Combined sources6

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2HH8NMR-A1-133[»]
ProteinModelPortaliP76156
SMRiP76156
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP76156

Family & Domainsi

Sequence similaritiesi

To E.coli YbcV and YcgX.Curated

Phylogenomic databases

eggNOGiENOG41064WM Bacteria
COG5562 LUCA
HOGENOMiHOG000119635
OMAiPIREMEM
PhylomeDBiP76156

Family and domain databases

Gene3Di3.30.1810.10, 1 hit
InterProiView protein in InterPro
IPR009833 DUF1398
IPR036696 YdfO-like_sf
PfamiView protein in Pfam
PF07166 DUF1398, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD021249 DUF1398, 1 hit
SUPFAMiSSF160419 SSF160419, 1 hit

Sequencei

Sequence statusi: Complete.

P76156-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDQVVIFKQI FDKVRNDLNY QWFYSELKRH NVSHYIYYLA TENVHIVLKN
60 70 80 90 100
DNTVLLKGLK NIVSVKFSKD RHLIETTSNK LKSREITFQE YRRNLAKAGV
110 120 130
FRWVTNIHEQ KRYYYTFDNS LLFTESIQKT TQILPR
Length:136
Mass (Da):16,497
Last modified:July 15, 1998 - v2
Checksum:i554B812E2DD7B33C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC74622.2
AP009048 Genomic DNA Translation: BAE76466.1
PIRiH64909
RefSeqiNP_416067.2, NC_000913.3
WP_000373090.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC74622; AAC74622; b1549
BAE76466; BAE76466; BAE76466
GeneIDi945992
KEGGiecj:JW5252
eco:b1549
PATRICifig|511145.12.peg.1621

Similar proteinsi

Entry informationi

Entry nameiYDFO_ECOLI
AccessioniPrimary (citable) accession number: P76156
Secondary accession number(s): Q2MB90
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: July 15, 1998
Last modified: March 28, 2018
This is version 110 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome
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Main funding by: National Institutes of Health