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Protein

Uncharacterized protein YdfO

Gene

ydfO

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6822-MONOMER.
ECOL316407:JW5252-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YdfO
Gene namesi
Name:ydfO
Ordered Locus Names:b1549, JW5252
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13827. ydfO.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 136136Uncharacterized protein YdfOPRO_0000168958Add
BLAST

Proteomic databases

PaxDbiP76156.

Interactioni

Protein-protein interaction databases

BioGridi4260250. 11 interactions.
STRINGi511145.b1549.

Structurei

Secondary structure

1
136
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi3 – 1715Combined sources
Helixi21 – 3010Combined sources
Beta strandi32 – 387Combined sources
Turni39 – 413Combined sources
Beta strandi42 – 476Combined sources
Beta strandi49 – 513Combined sources
Beta strandi53 – 575Combined sources
Helixi71 – 8313Combined sources
Helixi88 – 9710Combined sources
Beta strandi102 – 1065Combined sources
Turni107 – 1104Combined sources
Beta strandi111 – 1155Combined sources
Beta strandi121 – 1266Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2HH8NMR-A1-133[»]
ProteinModelPortaliP76156.
SMRiP76156. Positions 2-128.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP76156.

Family & Domainsi

Sequence similaritiesi

To E.coli YbcV and YcgX.Curated

Phylogenomic databases

eggNOGiENOG41064WM. Bacteria.
COG5562. LUCA.
HOGENOMiHOG000119635.
OMAiPIREMEM.
OrthoDBiEOG6WMJ0R.
PhylomeDBiP76156.

Family and domain databases

Gene3Di3.30.1810.10. 1 hit.
InterProiIPR009833. DUF1398.
[Graphical view]
PfamiPF07166. DUF1398. 1 hit.
[Graphical view]
ProDomiPD021249. DUF1398. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF160419. SSF160419. 1 hit.

Sequencei

Sequence statusi: Complete.

P76156-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDQVVIFKQI FDKVRNDLNY QWFYSELKRH NVSHYIYYLA TENVHIVLKN
60 70 80 90 100
DNTVLLKGLK NIVSVKFSKD RHLIETTSNK LKSREITFQE YRRNLAKAGV
110 120 130
FRWVTNIHEQ KRYYYTFDNS LLFTESIQKT TQILPR
Length:136
Mass (Da):16,497
Last modified:July 15, 1998 - v2
Checksum:i554B812E2DD7B33C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74622.2.
AP009048 Genomic DNA. Translation: BAE76466.1.
PIRiH64909.
RefSeqiNP_416067.2. NC_000913.3.
WP_000373090.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74622; AAC74622; b1549.
BAE76466; BAE76466; BAE76466.
GeneIDi945992.
KEGGiecj:JW5252.
eco:b1549.
PATRICi32118402. VBIEscCol129921_1621.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74622.2.
AP009048 Genomic DNA. Translation: BAE76466.1.
PIRiH64909.
RefSeqiNP_416067.2. NC_000913.3.
WP_000373090.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2HH8NMR-A1-133[»]
ProteinModelPortaliP76156.
SMRiP76156. Positions 2-128.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260250. 11 interactions.
STRINGi511145.b1549.

Proteomic databases

PaxDbiP76156.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74622; AAC74622; b1549.
BAE76466; BAE76466; BAE76466.
GeneIDi945992.
KEGGiecj:JW5252.
eco:b1549.
PATRICi32118402. VBIEscCol129921_1621.

Organism-specific databases

EchoBASEiEB3588.
EcoGeneiEG13827. ydfO.

Phylogenomic databases

eggNOGiENOG41064WM. Bacteria.
COG5562. LUCA.
HOGENOMiHOG000119635.
OMAiPIREMEM.
OrthoDBiEOG6WMJ0R.
PhylomeDBiP76156.

Enzyme and pathway databases

BioCyciEcoCyc:G6822-MONOMER.
ECOL316407:JW5252-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP76156.
PROiP76156.

Family and domain databases

Gene3Di3.30.1810.10. 1 hit.
InterProiIPR009833. DUF1398.
[Graphical view]
PfamiPF07166. DUF1398. 1 hit.
[Graphical view]
ProDomiPD021249. DUF1398. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF160419. SSF160419. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. "Solution NMR structure of the ydfO protein from Escherichia coli. northeast structural genomics target ER251."
    Northeast structural genomics consortium (NESG)
    Submitted (AUG-2006) to the PDB data bank
    Cited for: STRUCTURE BY NMR.

Entry informationi

Entry nameiYDFO_ECOLI
AccessioniPrimary (citable) accession number: P76156
Secondary accession number(s): Q2MB90
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: July 15, 1998
Last modified: January 20, 2016
This is version 102 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.