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Protein

Uncharacterized protein YneF

Gene

yneF

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

  • regulation of bacterial-type flagellum-dependent cell motility Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G6808-MONOMER.
ECOL316407:JW5825-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YneF
Gene namesi
Name:yneF
Ordered Locus Names:b1522, JW5825
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13814. yneF.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei10 – 32HelicalSequence analysisAdd BLAST23
Transmembranei39 – 61HelicalSequence analysisAdd BLAST23
Transmembranei76 – 98HelicalSequence analysisAdd BLAST23
Transmembranei111 – 133HelicalSequence analysisAdd BLAST23

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002013361 – 315Uncharacterized protein YneFAdd BLAST315

Proteomic databases

PaxDbiP76147.
PRIDEiP76147.

Interactioni

Protein-protein interaction databases

BioGridi4260884. 4 interactors.
DIPiDIP-47997N.
STRINGi511145.b1522.

Structurei

3D structure databases

ProteinModelPortaliP76147.
SMRiP76147.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini173 – 310GGDEFPROSITE-ProRule annotationAdd BLAST138

Sequence similaritiesi

Contains 1 GGDEF domain.PROSITE-ProRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105BZU. Bacteria.
ENOG410XNMH. LUCA.
HOGENOMiHOG000120740.
InParanoidiP76147.
OMAiATWLAWF.
PhylomeDBiP76147.

Family and domain databases

CDDicd01949. GGDEF. 1 hit.
InterProiIPR000160. GGDEF_dom.
IPR029787. Nucleotide_cyclase.
[Graphical view]
PfamiPF00990. GGDEF. 1 hit.
[Graphical view]
SMARTiSM00267. GGDEF. 1 hit.
[Graphical view]
SUPFAMiSSF55073. SSF55073. 1 hit.
TIGRFAMsiTIGR00254. GGDEF. 1 hit.
PROSITEiPS50887. GGDEF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P76147-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLADWFSEQF STGVLIVPCM LTLAIPGVLP RFKAEQMMPA IALIVSVIAS
60 70 80 90 100
VVIGGAGSLA FPLPALIWCA VRYTPQVTCL LTFVTGAVEI VLVANSVIDI
110 120 130 140 150
SVGSPFSIPQ MFSARLGIAT MAICPIMVSF SVAAINSLMK QVALRADFDF
160 170 180 190 200
LTQVYSRSGL YEALKSPSLK QTQHLTVMLL DIDYFKSIND NYGHECGDKV
210 220 230 240 250
LSVFARHIQK IVGDKGLVAR MGGEEFAVAV PSVNPVDGLL MAEKIRKGVE
260 270 280 290 300
LQPFTWQQKT LYLTVSIGVG SGRASYLTLT DDFNKLMVEA DTCLYRSKKD
310
GRNRTSTMRY GEEVV
Length:315
Mass (Da):34,322
Last modified:February 1, 1997 - v1
Checksum:iA4C4AB25E5EA57B0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74595.1.
AP009048 Genomic DNA. Translation: BAA15205.2.
PIRiE64906.
RefSeqiNP_416039.1. NC_000913.3.
WP_000878968.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74595; AAC74595; b1522.
BAA15205; BAA15205; BAA15205.
GeneIDi947422.
KEGGiecj:JW5825.
eco:b1522.
PATRICi32118342. VBIEscCol129921_1591.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74595.1.
AP009048 Genomic DNA. Translation: BAA15205.2.
PIRiE64906.
RefSeqiNP_416039.1. NC_000913.3.
WP_000878968.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76147.
SMRiP76147.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260884. 4 interactors.
DIPiDIP-47997N.
STRINGi511145.b1522.

Proteomic databases

PaxDbiP76147.
PRIDEiP76147.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74595; AAC74595; b1522.
BAA15205; BAA15205; BAA15205.
GeneIDi947422.
KEGGiecj:JW5825.
eco:b1522.
PATRICi32118342. VBIEscCol129921_1591.

Organism-specific databases

EchoBASEiEB3575.
EcoGeneiEG13814. yneF.

Phylogenomic databases

eggNOGiENOG4105BZU. Bacteria.
ENOG410XNMH. LUCA.
HOGENOMiHOG000120740.
InParanoidiP76147.
OMAiATWLAWF.
PhylomeDBiP76147.

Enzyme and pathway databases

BioCyciEcoCyc:G6808-MONOMER.
ECOL316407:JW5825-MONOMER.

Miscellaneous databases

PROiP76147.

Family and domain databases

CDDicd01949. GGDEF. 1 hit.
InterProiIPR000160. GGDEF_dom.
IPR029787. Nucleotide_cyclase.
[Graphical view]
PfamiPF00990. GGDEF. 1 hit.
[Graphical view]
SMARTiSM00267. GGDEF. 1 hit.
[Graphical view]
SUPFAMiSSF55073. SSF55073. 1 hit.
TIGRFAMsiTIGR00254. GGDEF. 1 hit.
PROSITEiPS50887. GGDEF. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYNEF_ECOLI
AccessioniPrimary (citable) accession number: P76147
Secondary accession number(s): P77191
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 27, 2002
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 118 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.