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Protein

Protein bdm

Gene

bdm

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

  • positive regulation of bacterial-type flagellum assembly Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G6776-MONOMER.
ECOL316407:JW5239-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein bdm
Alternative name(s):
Biofilm-dependent modulation protein
Gene namesi
Name:bdm
Synonyms:yddX
Ordered Locus Names:b1481, JW5239
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14301. bdm.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7171Protein bdmPRO_0000064901Add
BLAST

Proteomic databases

PaxDbiP76127.

Expressioni

Inductioni

Expression is reduced in biofilms and is repressed by a high salt concentration.1 Publication

Interactioni

Protein-protein interaction databases

BioGridi4260210. 12 interactions.
STRINGi511145.b1481.

Structurei

3D structure databases

ProteinModelPortaliP76127.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105TPS. Bacteria.
ENOG4111V9Q. LUCA.
HOGENOMiHOG000120675.
InParanoidiP76127.
OMAiVVSGQHA.
OrthoDBiEOG64XXRZ.

Family and domain databases

InterProiIPR019625. Biofilm-dep_modulation_Bdm_put.
[Graphical view]
PfamiPF10684. BDM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P76127-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFTYYQAENS TAEPALVNAI EQGLRAQHGV VTEDDILMEL TKWVEASDND
60 70
ILSDIYQQTI NYVVSGQHPT L
Length:71
Mass (Da):7,987
Last modified:February 21, 2002 - v2
Checksum:iB3DB084E82CDAA66
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74554.2.
AP009048 Genomic DNA. Translation: BAE76453.1.
PIRiD64901.
RefSeqiNP_415998.4. NC_000913.3.
WP_000495771.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74554; AAC74554; b1481.
BAE76453; BAE76453; BAE76453.
GeneIDi946041.
KEGGiecj:JW5239.
eco:b1481.
PATRICi32118256. VBIEscCol129921_1548.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74554.2.
AP009048 Genomic DNA. Translation: BAE76453.1.
PIRiD64901.
RefSeqiNP_415998.4. NC_000913.3.
WP_000495771.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76127.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260210. 12 interactions.
STRINGi511145.b1481.

Proteomic databases

PaxDbiP76127.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74554; AAC74554; b1481.
BAE76453; BAE76453; BAE76453.
GeneIDi946041.
KEGGiecj:JW5239.
eco:b1481.
PATRICi32118256. VBIEscCol129921_1548.

Organism-specific databases

EchoBASEiEB4048.
EcoGeneiEG14301. bdm.

Phylogenomic databases

eggNOGiENOG4105TPS. Bacteria.
ENOG4111V9Q. LUCA.
HOGENOMiHOG000120675.
InParanoidiP76127.
OMAiVVSGQHA.
OrthoDBiEOG64XXRZ.

Enzyme and pathway databases

BioCyciEcoCyc:G6776-MONOMER.
ECOL316407:JW5239-MONOMER.

Miscellaneous databases

PROiP76127.

Family and domain databases

InterProiIPR019625. Biofilm-dep_modulation_Bdm_put.
[Graphical view]
PfamiPF10684. BDM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. "Abiotic surface sensing and biofilm-dependent regulation of gene expression in Escherichia coli."
    Prigent-Combaret C., Vidal O., Dorel C., Lejeune P.
    J. Bacteriol. 181:5993-6002(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: INDUCTION.
    Strain: K12 / MC4100 / PHL644.

Entry informationi

Entry nameiBDM_ECOLI
AccessioniPrimary (citable) accession number: P76127
Secondary accession number(s): Q2MBA3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 21, 2002
Last modified: January 20, 2016
This is version 87 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.