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Protein

Putative transposase YncI

Gene

yncI

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein uncertaini

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

DNA recombination, Transposition

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:G6767-MONOMER.
EcoCyc:G6768-MONOMER.
ECOL316407:JW1453-MONOMER.
ECOL316407:JW5237-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative transposase YncI
Gene namesi
Name:yncI
Synonyms:yncM
Ordered Locus Names:b1459, JW1453/JW5237
ORF Names:b1458
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14258. yncI.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 374374Putative transposase YncIPRO_0000246145Add
BLAST

Interactioni

Protein-protein interaction databases

BioGridi4262888. 52 interactions.
4262889. 186 interactions.
DIPiDIP-28080N.
IntActiP76119. 1 interaction.
STRINGi316407.85674976.

Structurei

3D structure databases

ProteinModelPortaliP76119.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the transposase 11 family.Curated

Phylogenomic databases

eggNOGiCOG5433. LUCA.
HOGENOMiHOG000042098.
InParanoidiP76119.
OMAiDYGHGRI.
PhylomeDBiP76119.

Family and domain databases

InterProiIPR002559. Transposase_11.
IPR032806. YbfD_N.
[Graphical view]
PfamiPF01609. DDE_Tnp_1. 1 hit.
PF13808. DDE_Tnp_1_assoc. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P76119-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSIQSLLDYI SVTPDIRQQG KVKHKLSAIL FLTVCAVIAG ADEWQEIEDF
60 70 80 90 100
GHERLEWLKK YGDFDNGIPV DDTIARVVSN IDSLAFEKMF IEWMQECHEI
110 120 130 140 150
TDGEIIAIDG KTIRGSFDKG KRKGAIHMVS AFSNENGVVL GQVKTEAKSN
160 170 180 190 200
EITAIPELLN LLYLKKNLIT IDAMGCQKDI ASKIKDKKAD YLLAVKGNQG
210 220 230 240 250
KLHHAFEEKF PVNVFSNYKG DSFSTQEISH GRKETRLHIV SNVTRLNFCD
260 270 280 290 300
FEFEWKGLKK LCVALSFRQK KEDKSAEGVS IRYYISSKDM DAKEFAHAIR
310 320 330 340 350
AHWLIEHSLH WVLDVKMNED ASRIRRGNAA EIISGIKKMA LNLLRDCKDI
360 370
KGEEEKKEGC VKHRERSSEV HFLY
Length:374
Mass (Da):42,653
Last modified:November 28, 2006 - v2
Checksum:i1B320125007E2BAE
GO

Sequence cautioni

The sequence BAA15089 differs from that shown. Reason: Frameshift at position 245. Curated
The sequence BAA15090 differs from that shown. Reason: Erroneous termination at position 331. Translated as Glu.Curated
The sequence U00096 differs from that shown. Reason: Erroneous termination at position 331. Translated as Glu.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAA15089.2. Frameshift.
AP009048 Genomic DNA. Translation: BAA15090.2. Sequence problems.
PIRiE64898.
F64898.

Genome annotation databases

EnsemblBacteriaiBAA15089; BAA15089; BAA15089.
BAA15090; BAA15090; BAA15090.
KEGGiecj:JW1453.
ecj:JW5237.
PATRICi48662227. VBIEscCol107702_1475.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAA15089.2. Frameshift.
AP009048 Genomic DNA. Translation: BAA15090.2. Sequence problems.
PIRiE64898.
F64898.

3D structure databases

ProteinModelPortaliP76119.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262888. 52 interactions.
4262889. 186 interactions.
DIPiDIP-28080N.
IntActiP76119. 1 interaction.
STRINGi316407.85674976.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA15089; BAA15089; BAA15089.
BAA15090; BAA15090; BAA15090.
KEGGiecj:JW1453.
ecj:JW5237.
PATRICi48662227. VBIEscCol107702_1475.

Organism-specific databases

EcoGeneiEG14258. yncI.

Phylogenomic databases

eggNOGiCOG5433. LUCA.
HOGENOMiHOG000042098.
InParanoidiP76119.
OMAiDYGHGRI.
PhylomeDBiP76119.

Enzyme and pathway databases

BioCyciEcoCyc:G6767-MONOMER.
EcoCyc:G6768-MONOMER.
ECOL316407:JW1453-MONOMER.
ECOL316407:JW5237-MONOMER.

Family and domain databases

InterProiIPR002559. Transposase_11.
IPR032806. YbfD_N.
[Graphical view]
PfamiPF01609. DDE_Tnp_1. 1 hit.
PF13808. DDE_Tnp_1_assoc. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYNCI_ECOLI
AccessioniPrimary (citable) accession number: P76119
Secondary accession number(s): P76120, Q79EJ9, Q79EK0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 25, 2006
Last sequence update: November 28, 2006
Last modified: September 7, 2016
This is version 94 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Could be the product of a pseudogene.Curated

Keywords - Technical termi

Complete proteome, Reference proteome, Transposable element

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.