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Protein

Uncharacterized protein YncE

Gene

yncE

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • DNA binding Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G6763-MONOMER.
ECOL316407:JW1447-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YncE
Gene namesi
Name:yncE
Ordered Locus Names:b1452, JW1447
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13775. yncE.

Subcellular locationi

GO - Cellular componenti

  • outer membrane-bounded periplasmic space Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 30Sequence analysisAdd BLAST30
ChainiPRO_000001383831 – 353Uncharacterized protein YncEAdd BLAST323

Proteomic databases

EPDiP76116.
PaxDbiP76116.
PRIDEiP76116.

Expressioni

Inductioni

Repressed by Fur.1 Publication

Interactioni

Subunit structurei

Monomer.1 Publication

Protein-protein interaction databases

BioGridi4260198. 4 interactors.
DIPiDIP-28079N.
IntActiP76116. 4 interactors.
STRINGi511145.b1452.

Structurei

Secondary structure

1353
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi34 – 49Combined sources16
Turni50 – 53Combined sources4
Beta strandi54 – 59Combined sources6
Turni63 – 65Combined sources3
Beta strandi66 – 74Combined sources9
Turni76 – 78Combined sources3
Beta strandi81 – 89Combined sources9
Beta strandi93 – 97Combined sources5
Turni98 – 101Combined sources4
Beta strandi102 – 107Combined sources6
Turni108 – 111Combined sources4
Beta strandi112 – 117Combined sources6
Turni118 – 120Combined sources3
Beta strandi123 – 129Combined sources7
Beta strandi142 – 149Combined sources8
Turni150 – 153Combined sources4
Beta strandi154 – 163Combined sources10
Beta strandi165 – 170Combined sources6
Turni171 – 174Combined sources4
Beta strandi175 – 180Combined sources6
Beta strandi191 – 193Combined sources3
Turni194 – 197Combined sources4
Beta strandi198 – 202Combined sources5
Beta strandi206 – 212Combined sources7
Turni213 – 216Combined sources4
Beta strandi217 – 223Combined sources7
Beta strandi227 – 229Combined sources3
Beta strandi233 – 239Combined sources7
Turni240 – 243Combined sources4
Beta strandi244 – 259Combined sources16
Turni260 – 262Combined sources3
Beta strandi265 – 270Combined sources6
Beta strandi277 – 280Combined sources4
Turni281 – 284Combined sources4
Beta strandi285 – 290Combined sources6
Turni291 – 294Combined sources4
Beta strandi295 – 300Combined sources6
Turni301 – 304Combined sources4
Beta strandi305 – 311Combined sources7
Beta strandi314 – 321Combined sources8
Beta strandi327 – 333Combined sources7
Beta strandi338 – 340Combined sources3
Beta strandi346 – 352Combined sources7

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3VGZX-ray1.70A/B/C/D1-353[»]
3VH0X-ray2.90A/B/C/D1-353[»]
ProteinModelPortaliP76116.
SMRiP76116.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4108NS2. Bacteria.
COG3391. LUCA.
HOGENOMiHOG000120631.
InParanoidiP76116.
OMAiQDDGKEH.
PhylomeDBiP76116.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR011048. Haem_d1.
IPR015943. WD40/YVTN_repeat-like_dom.
[Graphical view]
SUPFAMiSSF51004. SSF51004. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P76116-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHLRHLFSSR LRGSLLLGSL LVVSSFSTQA AEEMLRKAVG KGAYEMAYSQ
60 70 80 90 100
QENALWLATS QSRKLDKGGV VYRLDPVTLE VTQAIHNDLK PFGATINNTT
110 120 130 140 150
QTLWFGNTVN SAVTAIDAKT GEVKGRLVLD DRKRTEEVRP LQPRELVADD
160 170 180 190 200
ATNTVYISGI GKESVIWVVD GGNIKLKTAI QNTGKMSTGL ALDSEGKRLY
210 220 230 240 250
TTNADGELIT IDTADNKILS RKKLLDDGKE HFFINISLDT ARQRAFITDS
260 270 280 290 300
KAAEVLVVDT RNGNILAKVA APESLAVLFN PARNEAYVTH RQAGKVSVID
310 320 330 340 350
AKSYKVVKTF DTPTHPNSLA LSADGKTLYV SVKQKSTKQQ EATQPDDVIR

IAL
Length:353
Mass (Da):38,613
Last modified:February 1, 1997 - v1
Checksum:iF0CA76C737035671
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74534.1.
AP009048 Genomic DNA. Translation: BAE76445.1.
PIRiG64897.
RefSeqiNP_415969.1. NC_000913.3.
WP_000550695.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74534; AAC74534; b1452.
BAE76445; BAE76445; BAE76445.
GeneIDi946006.
KEGGiecj:JW1447.
eco:b1452.
PATRICi32118196. VBIEscCol129921_1518.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74534.1.
AP009048 Genomic DNA. Translation: BAE76445.1.
PIRiG64897.
RefSeqiNP_415969.1. NC_000913.3.
WP_000550695.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3VGZX-ray1.70A/B/C/D1-353[»]
3VH0X-ray2.90A/B/C/D1-353[»]
ProteinModelPortaliP76116.
SMRiP76116.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260198. 4 interactors.
DIPiDIP-28079N.
IntActiP76116. 4 interactors.
STRINGi511145.b1452.

Proteomic databases

EPDiP76116.
PaxDbiP76116.
PRIDEiP76116.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74534; AAC74534; b1452.
BAE76445; BAE76445; BAE76445.
GeneIDi946006.
KEGGiecj:JW1447.
eco:b1452.
PATRICi32118196. VBIEscCol129921_1518.

Organism-specific databases

EchoBASEiEB3537.
EcoGeneiEG13775. yncE.

Phylogenomic databases

eggNOGiENOG4108NS2. Bacteria.
COG3391. LUCA.
HOGENOMiHOG000120631.
InParanoidiP76116.
OMAiQDDGKEH.
PhylomeDBiP76116.

Enzyme and pathway databases

BioCyciEcoCyc:G6763-MONOMER.
ECOL316407:JW1447-MONOMER.

Miscellaneous databases

PROiP76116.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR011048. Haem_d1.
IPR015943. WD40/YVTN_repeat-like_dom.
[Graphical view]
SUPFAMiSSF51004. SSF51004. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYNCE_ECOLI
AccessioniPrimary (citable) accession number: P76116
Secondary accession number(s): Q2MBB1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 21, 2002
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 117 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Miscellaneous

Preliminary crystallization indicates the presence of a single beta-propeller domain that contains 7 4-stranded beta-sheets.

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.