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Protein

Probable TonB-dependent receptor YncD

Gene

yncD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Probable receptor, TonB-dependent.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionReceptor

Enzyme and pathway databases

BioCyciEcoCyc:G6762-MONOMER

Protein family/group databases

TCDBi1.B.14.9.5 the outer membrane receptor (omr) family
1.B.22.1.3 the outer bacterial membrane secretin (secretin) family

Names & Taxonomyi

Protein namesi
Recommended name:
Probable TonB-dependent receptor YncD
Gene namesi
Name:yncD
Ordered Locus Names:b1451, JW1446
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13774 yncD

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Cell outer membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 23Sequence analysisAdd BLAST23
ChainiPRO_000003479124 – 700Probable TonB-dependent receptor YncDAdd BLAST677

Proteomic databases

PaxDbiP76115
PRIDEiP76115

Interactioni

Protein-protein interaction databases

BioGridi4260197, 177 interactors
DIPiDIP-12750N
IntActiP76115, 3 interactors
STRINGi316385.ECDH10B_1581

Structurei

3D structure databases

ProteinModelPortaliP76115
SMRiP76115
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi680 – 700TonB C-terminal boxAdd BLAST21

Sequence similaritiesi

Belongs to the TonB-dependent receptor family.Curated

Keywords - Domaini

Signal, TonB box, Transmembrane, Transmembrane beta strand

Phylogenomic databases

eggNOGiENOG4105CHB Bacteria
COG1629 LUCA
HOGENOMiHOG000120630
InParanoidiP76115
KOiK02014
OMAiDTRWTHR
PhylomeDBiP76115

Family and domain databases

Gene3Di2.170.130.10, 1 hit
2.40.170.20, 1 hit
InterProiView protein in InterPro
IPR012910 Plug_dom
IPR037066 Plug_dom_sf
IPR000531 TonB-dep_rcpt_b-brl
IPR036942 TonB_rcpt_b-brl_sf
IPR010105 TonB_sidphr_rcpt
PfamiView protein in Pfam
PF07715 Plug, 1 hit
PF00593 TonB_dep_Rec, 1 hit
TIGRFAMsiTIGR01783 TonB-siderophor, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P76115-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKIFSVRQTV LPALLVLSPV VFAADEQTMI VSAAPQVVSE LDTPAAVSVV
60 70 80 90 100
DGEEMRLATP RINLSESLTG VPGLQVQNRQ NYAQDLQLSI RGFGSRSTYG
110 120 130 140 150
IRGIRLYVDG IPATMPDGQG QTSNIDLSSV QNVEVLRGPF SALYGNASGG
160 170 180 190 200
VMNVTTQTGQ QPPTIEASSY YGSFGSWRYG LKATGATGDG TQPGDVDYTV
210 220 230 240 250
STTRFTTHGY RDHSGAQKNL ANAKLGVRID EASKLSLIFN SVDIKADDPG
260 270 280 290 300
GLTKAEWKAN PQQAPRAEQY DTRKTIKQTQ AGLRYERSLS SRDDMSVMMY
310 320 330 340 350
AGERETTQYQ SIPMAPQLNP SHAGGVITLQ RHYQGIDSRW THRGELGVPV
360 370 380 390 400
TFTTGLNYEN MSENRKGYNN FRLNSGMPEY GQKGELRRDE RNLMWNIDPY
410 420 430 440 450
LQTQWQLSEK LSLDAGVRYS SVWFDSNDHY VTPGNGDDSG DASYHKWLPA
460 470 480 490 500
GSLKYAMTDA WNIYLAAGRG FETPTINELS YRADGQSGMN LGLKPSTNDT
510 520 530 540 550
IEIGSKTRIG DGLLSLALFQ TDTDDEIVVD SSSGGRTTYK NAGKTRRQGA
560 570 580 590 600
ELAWDQRFAG DFRVNASWTW LDATYRSNVC NEQDCNGNRM PGIARNMGFA
610 620 630 640 650
SIGYVPEDGW YAGTEARYMG DIMADDENTA KAPSYTLVGL FTGYKYNYHN
660 670 680 690 700
LTVDLFGRVD NLFDKEYVGS VIVNESNGRY YEPSPGRNYG VGMNIAWRFE
Length:700
Mass (Da):77,261
Last modified:February 1, 1997 - v1
Checksum:i7B3B96C6ABA48FE4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC74533.1
AP009048 Genomic DNA Translation: BAE76444.1
PIRiF64897
RefSeqiNP_415968.1, NC_000913.3
WP_000689363.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC74533; AAC74533; b1451
BAE76444; BAE76444; BAE76444
GeneIDi946015
KEGGiecj:JW1446
eco:b1451
PATRICifig|1411691.4.peg.817

Similar proteinsi

Entry informationi

Entry nameiYNCD_ECOLI
AccessioniPrimary (citable) accession number: P76115
Secondary accession number(s): Q2MBB2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 15, 1999
Last sequence update: February 1, 1997
Last modified: March 28, 2018
This is version 135 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health