Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Probable TonB-dependent receptor YncD

Gene

yncD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Probable receptor, TonB-dependent.

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Receptor

Enzyme and pathway databases

BioCyciEcoCyc:G6762-MONOMER.
ECOL316407:JW1446-MONOMER.

Protein family/group databases

TCDBi1.B.14.9.5. the outer membrane receptor (omr) family.
1.B.22.1.3. the outer bacterial membrane secretin (secretin) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable TonB-dependent receptor YncD
Gene namesi
Name:yncD
Ordered Locus Names:b1451, JW1446
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13774. yncD.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell outer membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2323Sequence analysisAdd
BLAST
Chaini24 – 700677Probable TonB-dependent receptor YncDPRO_0000034791Add
BLAST

Proteomic databases

PaxDbiP76115.
PRIDEiP76115.

Interactioni

Protein-protein interaction databases

BioGridi4260197. 176 interactions.
DIPiDIP-12750N.
IntActiP76115. 3 interactions.
STRINGi511145.b1451.

Structurei

3D structure databases

ProteinModelPortaliP76115.
SMRiP76115. Positions 26-695.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi680 – 70021TonB C-terminal boxAdd
BLAST

Sequence similaritiesi

Belongs to the TonB-dependent receptor family.Curated

Keywords - Domaini

Signal, TonB box, Transmembrane, Transmembrane beta strand

Phylogenomic databases

eggNOGiENOG4105CHB. Bacteria.
COG1629. LUCA.
HOGENOMiHOG000120630.
InParanoidiP76115.
KOiK02014.
OMAiTYRTNVC.
OrthoDBiEOG6H4K59.
PhylomeDBiP76115.

Family and domain databases

Gene3Di2.170.130.10. 1 hit.
2.40.170.20. 1 hit.
InterProiIPR012910. Plug_dom.
IPR000531. TonB-dep_rcpt_b-brl.
IPR010105. TonB_sidphr_rcpt.
[Graphical view]
PfamiPF07715. Plug. 1 hit.
PF00593. TonB_dep_Rec. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01783. TonB-siderophor. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P76115-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKIFSVRQTV LPALLVLSPV VFAADEQTMI VSAAPQVVSE LDTPAAVSVV
60 70 80 90 100
DGEEMRLATP RINLSESLTG VPGLQVQNRQ NYAQDLQLSI RGFGSRSTYG
110 120 130 140 150
IRGIRLYVDG IPATMPDGQG QTSNIDLSSV QNVEVLRGPF SALYGNASGG
160 170 180 190 200
VMNVTTQTGQ QPPTIEASSY YGSFGSWRYG LKATGATGDG TQPGDVDYTV
210 220 230 240 250
STTRFTTHGY RDHSGAQKNL ANAKLGVRID EASKLSLIFN SVDIKADDPG
260 270 280 290 300
GLTKAEWKAN PQQAPRAEQY DTRKTIKQTQ AGLRYERSLS SRDDMSVMMY
310 320 330 340 350
AGERETTQYQ SIPMAPQLNP SHAGGVITLQ RHYQGIDSRW THRGELGVPV
360 370 380 390 400
TFTTGLNYEN MSENRKGYNN FRLNSGMPEY GQKGELRRDE RNLMWNIDPY
410 420 430 440 450
LQTQWQLSEK LSLDAGVRYS SVWFDSNDHY VTPGNGDDSG DASYHKWLPA
460 470 480 490 500
GSLKYAMTDA WNIYLAAGRG FETPTINELS YRADGQSGMN LGLKPSTNDT
510 520 530 540 550
IEIGSKTRIG DGLLSLALFQ TDTDDEIVVD SSSGGRTTYK NAGKTRRQGA
560 570 580 590 600
ELAWDQRFAG DFRVNASWTW LDATYRSNVC NEQDCNGNRM PGIARNMGFA
610 620 630 640 650
SIGYVPEDGW YAGTEARYMG DIMADDENTA KAPSYTLVGL FTGYKYNYHN
660 670 680 690 700
LTVDLFGRVD NLFDKEYVGS VIVNESNGRY YEPSPGRNYG VGMNIAWRFE
Length:700
Mass (Da):77,261
Last modified:February 1, 1997 - v1
Checksum:i7B3B96C6ABA48FE4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74533.1.
AP009048 Genomic DNA. Translation: BAE76444.1.
PIRiF64897.
RefSeqiNP_415968.1. NC_000913.3.
WP_000689363.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74533; AAC74533; b1451.
BAE76444; BAE76444; BAE76444.
GeneIDi946015.
KEGGiecj:JW1446.
eco:b1451.
PATRICi32118194. VBIEscCol129921_1517.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74533.1.
AP009048 Genomic DNA. Translation: BAE76444.1.
PIRiF64897.
RefSeqiNP_415968.1. NC_000913.3.
WP_000689363.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76115.
SMRiP76115. Positions 26-695.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260197. 176 interactions.
DIPiDIP-12750N.
IntActiP76115. 3 interactions.
STRINGi511145.b1451.

Protein family/group databases

TCDBi1.B.14.9.5. the outer membrane receptor (omr) family.
1.B.22.1.3. the outer bacterial membrane secretin (secretin) family.

Proteomic databases

PaxDbiP76115.
PRIDEiP76115.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74533; AAC74533; b1451.
BAE76444; BAE76444; BAE76444.
GeneIDi946015.
KEGGiecj:JW1446.
eco:b1451.
PATRICi32118194. VBIEscCol129921_1517.

Organism-specific databases

EchoBASEiEB3536.
EcoGeneiEG13774. yncD.

Phylogenomic databases

eggNOGiENOG4105CHB. Bacteria.
COG1629. LUCA.
HOGENOMiHOG000120630.
InParanoidiP76115.
KOiK02014.
OMAiTYRTNVC.
OrthoDBiEOG6H4K59.
PhylomeDBiP76115.

Enzyme and pathway databases

BioCyciEcoCyc:G6762-MONOMER.
ECOL316407:JW1446-MONOMER.

Miscellaneous databases

PROiP76115.

Family and domain databases

Gene3Di2.170.130.10. 1 hit.
2.40.170.20. 1 hit.
InterProiIPR012910. Plug_dom.
IPR000531. TonB-dep_rcpt_b-brl.
IPR010105. TonB_sidphr_rcpt.
[Graphical view]
PfamiPF07715. Plug. 1 hit.
PF00593. TonB_dep_Rec. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01783. TonB-siderophor. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYNCD_ECOLI
AccessioniPrimary (citable) accession number: P76115
Secondary accession number(s): Q2MBB2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1999
Last sequence update: February 1, 1997
Last modified: July 6, 2016
This is version 125 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.