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Protein

Inner membrane protein YdcZ

Gene

ydcZ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6758-MONOMER.
ECOL316407:JW1442-MONOMER.

Protein family/group databases

TCDBi2.A.7.21.2. the drug/metabolite transporter (dmt) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YdcZ
Gene namesi
Name:ydcZ
Ordered Locus Names:b1447, JW1442
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13769. ydcZ.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 4PeriplasmicSequence analysis4
Transmembranei5 – 25HelicalSequence analysisAdd BLAST21
Topological domaini26 – 33CytoplasmicSequence analysis8
Transmembranei34 – 54HelicalSequence analysisAdd BLAST21
Topological domaini55 – 70PeriplasmicSequence analysisAdd BLAST16
Transmembranei71 – 91HelicalSequence analysisAdd BLAST21
Topological domaini92 – 93CytoplasmicSequence analysis2
Transmembranei94 – 114HelicalSequence analysisAdd BLAST21
Topological domaini115 – 123PeriplasmicSequence analysis9
Transmembranei124 – 144HelicalSequence analysisAdd BLAST21
Topological domaini145 – 149CytoplasmicSequence analysis5

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001689391 – 149Inner membrane protein YdcZAdd BLAST149

Proteomic databases

PaxDbiP76111.
PRIDEiP76111.

Interactioni

Protein-protein interaction databases

DIPiDIP-11659N.
IntActiP76111. 1 interactor.
STRINGi511145.b1447.

Structurei

3D structure databases

ProteinModelPortaliP76111.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4108T9Y. Bacteria.
COG3238. LUCA.
HOGENOMiHOG000120609.
InParanoidiP76111.
KOiK09936.
OMAiISGYQYV.

Family and domain databases

InterProiIPR006750. YdcZ.
[Graphical view]
PfamiPF04657. DMT_YdcZ. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P76111-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNQSLTLAFL IAAGIGLVVQ NTLMVRITQT SSTILIAMLL NSLVGIVLFV
60 70 80 90 100
SILWFKQGMA GFGELVSSVR WWTLIPGLLG SFFVFASISG YQNVGAATTI
110 120 130 140
AVLVASQLIG GLMLDIFRSH GVPLRALFGP ICGAILLVVG AWLVARRSF
Length:149
Mass (Da):15,855
Last modified:February 1, 1997 - v1
Checksum:i51B015D1E24EC560
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74529.1.
AP009048 Genomic DNA. Translation: BAE76443.1.
PIRiB64897.
RefSeqiNP_415964.1. NC_000913.3.
WP_001076535.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74529; AAC74529; b1447.
BAE76443; BAE76443; BAE76443.
GeneIDi946008.
KEGGiecj:JW1442.
eco:b1447.
PATRICi32118186. VBIEscCol129921_1513.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74529.1.
AP009048 Genomic DNA. Translation: BAE76443.1.
PIRiB64897.
RefSeqiNP_415964.1. NC_000913.3.
WP_001076535.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76111.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-11659N.
IntActiP76111. 1 interactor.
STRINGi511145.b1447.

Protein family/group databases

TCDBi2.A.7.21.2. the drug/metabolite transporter (dmt) superfamily.

Proteomic databases

PaxDbiP76111.
PRIDEiP76111.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74529; AAC74529; b1447.
BAE76443; BAE76443; BAE76443.
GeneIDi946008.
KEGGiecj:JW1442.
eco:b1447.
PATRICi32118186. VBIEscCol129921_1513.

Organism-specific databases

EchoBASEiEB3532.
EcoGeneiEG13769. ydcZ.

Phylogenomic databases

eggNOGiENOG4108T9Y. Bacteria.
COG3238. LUCA.
HOGENOMiHOG000120609.
InParanoidiP76111.
KOiK09936.
OMAiISGYQYV.

Enzyme and pathway databases

BioCyciEcoCyc:G6758-MONOMER.
ECOL316407:JW1442-MONOMER.

Miscellaneous databases

PROiP76111.

Family and domain databases

InterProiIPR006750. YdcZ.
[Graphical view]
PfamiPF04657. DMT_YdcZ. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYDCZ_ECOLI
AccessioniPrimary (citable) accession number: P76111
Secondary accession number(s): Q2MBB3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.