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P76108 (YDCS_ECOLI) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 102. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Putative ABC transporter periplasmic-binding protein YdcS
Gene names
Name:ydcS
Ordered Locus Names:b1440, JW1435
OrganismEscherichia coli (strain K12) [Reference proteome] [HAMAP]
Taxonomic identifier83333 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Protein attributes

Sequence length381 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Function

Probably part of the binding-protein-dependent transport system YdcSTUV.

Subcellular location

Periplasm By similarity.

Sequence similarities

Belongs to the bacterial solute-binding protein PotD/PotF family.

Ontologies

Keywords
   Biological processTransport
   Cellular componentPeriplasm
   DomainSignal
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processpolyamine transport

Inferred from electronic annotation. Source: InterPro

   Cellular_componentperiplasmic space

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionpolyamine binding

Inferred from electronic annotation. Source: InterPro

transporter activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2222 Potential
Chain23 – 381359Putative ABC transporter periplasmic-binding protein YdcS
PRO_0000031843

Sequences

Sequence LengthMass (Da)Tools
P76108 [UniParc].

Last modified February 1, 1997. Version 1.
Checksum: FC5072B0B52CFB05

FASTA38142,295
        10         20         30         40         50         60 
MSKTFARSSL CALSMTIMTA HAAEPPTNLD KPEGRLDIIA WPGYIERGQT DKQYDWVTQF 

        70         80         90        100        110        120 
EKETGCAVNV KTAATSDEMV SLMTKGGYDL VTASGDASLR LIMGKRVQPI NTALIPNWKT 

       130        140        150        160        170        180 
LDPRVVKGDW FNVGGKVYGT PYQWGPNLLM YNTKTFPTPP DSWQVVFVEQ NLPDGKSNKG 

       190        200        210        220        230        240 
RVQAYDGPIY IADAALFVKA TQPQLGISDP YQLTEEQYQA VLKVLRAQHS LIHRYWHDTT 

       250        260        270        280        290        300 
VQMSDFKNEG VVASSAWPYQ ANALKAEGQP VATVFPKEGV TGWADTTMLH SEAKHPVCAY 

       310        320        330        340        350        360 
KWMNWSLTPK VQGDVAAWFG SLPVVPEGCK ASPLLGEKGC ETNGFNYFDK IAFWKTPIAE 

       370        380 
GGKFVPYSRW TQDYIAIMGG R 

« Hide

References

[1]"The complete genome sequence of Escherichia coli K-12."
Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y.
Science 277:1453-1462(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / MG1655 / ATCC 47076.
[2]"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U00096 Genomic DNA. Translation: AAC74522.1.
AP009048 Genomic DNA. Translation: BAE76440.1.
PIRC64896.
RefSeqNP_415957.1. NC_000913.3.
YP_489705.1. NC_007779.1.

3D structure databases

ProteinModelPortalP76108.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

IntActP76108. 19 interactions.
STRING511145.b1440.

Proteomic databases

PaxDbP76108.
PRIDEP76108.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAC74522; AAC74522; b1440.
BAE76440; BAE76440; BAE76440.
GeneID12933902.
946005.
KEGGecj:Y75_p1416.
eco:b1440.
PATRIC32118170. VBIEscCol129921_1505.

Organism-specific databases

EchoBASEEB3525.
EcoGeneEG13762. ydcS.

Phylogenomic databases

eggNOGCOG0687.
HOGENOMHOG000283673.
KOK02055.
OMAEGCKAST.
OrthoDBEOG6C2WCR.
PhylomeDBP76108.

Enzyme and pathway databases

BioCycEcoCyc:YDCS-MONOMER.
ECOL316407:JW1435-MONOMER.
RETL1328306-WGS:GSTH-3734-MONOMER.

Gene expression databases

GenevestigatorP76108.

Family and domain databases

InterProIPR006059. Solute-bd_1_bac.
IPR001188. Sperm_putr-bd.
[Graphical view]
PfamPF01547. SBP_bac_1. 1 hit.
[Graphical view]
PRINTSPR00909. SPERMDNBNDNG.
ProtoNetSearch...

Other

PROP76108.

Entry information

Entry nameYDCS_ECOLI
AccessionPrimary (citable) accession number: P76108
Secondary accession number(s): Q2MBB6
Entry history
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: February 1, 1997
Last modified: July 9, 2014
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Escherichia coli

Escherichia coli (strain K12): entries and cross-references to EcoGene