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P76108

- YDCS_ECOLI

UniProt

P76108 - YDCS_ECOLI

Protein

Putative ABC transporter periplasmic-binding protein YdcS

Gene

ydcS

Organism
Escherichia coli (strain K12)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 103 (01 Oct 2014)
      Sequence version 1 (01 Feb 1997)
      Previous versions | rss
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    Functioni

    Probably part of the binding-protein-dependent transport system YdcSTUV.

    GO - Molecular functioni

    1. polyamine binding Source: InterPro
    2. transporter activity Source: InterPro

    GO - Biological processi

    1. polyamine transport Source: InterPro

    Keywords - Biological processi

    Transport

    Enzyme and pathway databases

    BioCyciEcoCyc:YDCS-MONOMER.
    ECOL316407:JW1435-MONOMER.
    RETL1328306-WGS:GSTH-3734-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Putative ABC transporter periplasmic-binding protein YdcS
    Gene namesi
    Name:ydcS
    Ordered Locus Names:b1440, JW1435
    OrganismiEscherichia coli (strain K12)
    Taxonomic identifieri83333 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
    ProteomesiUP000000318: Chromosome, UP000000625: Chromosome

    Organism-specific databases

    EcoGeneiEG13762. ydcS.

    Subcellular locationi

    Periplasm By similarity

    GO - Cellular componenti

    1. periplasmic space Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Periplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2222Sequence AnalysisAdd
    BLAST
    Chaini23 – 381359Putative ABC transporter periplasmic-binding protein YdcSPRO_0000031843Add
    BLAST

    Proteomic databases

    PaxDbiP76108.
    PRIDEiP76108.

    Expressioni

    Gene expression databases

    GenevestigatoriP76108.

    Interactioni

    Protein-protein interaction databases

    IntActiP76108. 19 interactions.
    STRINGi511145.b1440.

    Structurei

    3D structure databases

    ProteinModelPortaliP76108.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Keywords - Domaini

    Signal

    Phylogenomic databases

    eggNOGiCOG0687.
    HOGENOMiHOG000283673.
    KOiK02055.
    OMAiEGCKAST.
    OrthoDBiEOG6C2WCR.
    PhylomeDBiP76108.

    Family and domain databases

    InterProiIPR006059. Solute-bd_1_bac.
    IPR001188. Sperm_putr-bd.
    [Graphical view]
    PfamiPF01547. SBP_bac_1. 1 hit.
    [Graphical view]
    PRINTSiPR00909. SPERMDNBNDNG.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P76108-1 [UniParc]FASTAAdd to Basket

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    MSKTFARSSL CALSMTIMTA HAAEPPTNLD KPEGRLDIIA WPGYIERGQT    50
    DKQYDWVTQF EKETGCAVNV KTAATSDEMV SLMTKGGYDL VTASGDASLR 100
    LIMGKRVQPI NTALIPNWKT LDPRVVKGDW FNVGGKVYGT PYQWGPNLLM 150
    YNTKTFPTPP DSWQVVFVEQ NLPDGKSNKG RVQAYDGPIY IADAALFVKA 200
    TQPQLGISDP YQLTEEQYQA VLKVLRAQHS LIHRYWHDTT VQMSDFKNEG 250
    VVASSAWPYQ ANALKAEGQP VATVFPKEGV TGWADTTMLH SEAKHPVCAY 300
    KWMNWSLTPK VQGDVAAWFG SLPVVPEGCK ASPLLGEKGC ETNGFNYFDK 350
    IAFWKTPIAE GGKFVPYSRW TQDYIAIMGG R 381
    Length:381
    Mass (Da):42,295
    Last modified:February 1, 1997 - v1
    Checksum:iFC5072B0B52CFB05
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00096 Genomic DNA. Translation: AAC74522.1.
    AP009048 Genomic DNA. Translation: BAE76440.1.
    PIRiC64896.
    RefSeqiNP_415957.1. NC_000913.3.
    YP_489705.1. NC_007779.1.

    Genome annotation databases

    EnsemblBacteriaiAAC74522; AAC74522; b1440.
    BAE76440; BAE76440; BAE76440.
    GeneIDi12933902.
    946005.
    KEGGiecj:Y75_p1416.
    eco:b1440.
    PATRICi32118170. VBIEscCol129921_1505.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00096 Genomic DNA. Translation: AAC74522.1 .
    AP009048 Genomic DNA. Translation: BAE76440.1 .
    PIRi C64896.
    RefSeqi NP_415957.1. NC_000913.3.
    YP_489705.1. NC_007779.1.

    3D structure databases

    ProteinModelPortali P76108.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi P76108. 19 interactions.
    STRINGi 511145.b1440.

    Proteomic databases

    PaxDbi P76108.
    PRIDEi P76108.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAC74522 ; AAC74522 ; b1440 .
    BAE76440 ; BAE76440 ; BAE76440 .
    GeneIDi 12933902.
    946005.
    KEGGi ecj:Y75_p1416.
    eco:b1440.
    PATRICi 32118170. VBIEscCol129921_1505.

    Organism-specific databases

    EchoBASEi EB3525.
    EcoGenei EG13762. ydcS.

    Phylogenomic databases

    eggNOGi COG0687.
    HOGENOMi HOG000283673.
    KOi K02055.
    OMAi EGCKAST.
    OrthoDBi EOG6C2WCR.
    PhylomeDBi P76108.

    Enzyme and pathway databases

    BioCyci EcoCyc:YDCS-MONOMER.
    ECOL316407:JW1435-MONOMER.
    RETL1328306-WGS:GSTH-3734-MONOMER.

    Miscellaneous databases

    PROi P76108.

    Gene expression databases

    Genevestigatori P76108.

    Family and domain databases

    InterProi IPR006059. Solute-bd_1_bac.
    IPR001188. Sperm_putr-bd.
    [Graphical view ]
    Pfami PF01547. SBP_bac_1. 1 hit.
    [Graphical view ]
    PRINTSi PR00909. SPERMDNBNDNG.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / MG1655 / ATCC 47076.
    2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
      Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
      Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

    Entry informationi

    Entry nameiYDCS_ECOLI
    AccessioniPrimary (citable) accession number: P76108
    Secondary accession number(s): Q2MBB6
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 30, 2000
    Last sequence update: February 1, 1997
    Last modified: October 1, 2014
    This is version 103 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Escherichia coli
      Escherichia coli (strain K12): entries and cross-references to EcoGene
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3