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Protein

Putative ABC transporter periplasmic-binding protein YdcS

Gene

ydcS

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Probably part of the binding-protein-dependent transport system YdcSTUV.

GO - Molecular functioni

GO - Biological processi

  • DNA import into cell involved in transformation Source: EcoCyc
  • polyamine transport Source: InterPro
  • poly-hydroxybutyrate biosynthetic process Source: EcoCyc

Keywordsi

Biological processTransport

Enzyme and pathway databases

BioCyciEcoCyc:YDCS-MONOMER.
MetaCyc:YDCS-MONOMER.

Protein family/group databases

TCDBi3.A.1.11.9. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative ABC transporter periplasmic-binding protein YdcS
Gene namesi
Name:ydcS
Ordered Locus Names:b1440, JW1435
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13762. ydcS.

Subcellular locationi

GO - Cellular componenti

  • outer membrane-bounded periplasmic space Source: EcoCyc

Keywords - Cellular componenti

Periplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 22Sequence analysisAdd BLAST22
ChainiPRO_000003184323 – 381Putative ABC transporter periplasmic-binding protein YdcSAdd BLAST359

Proteomic databases

PaxDbiP76108.
PRIDEiP76108.

Interactioni

Protein-protein interaction databases

BioGridi4262896. 51 interactors.
IntActiP76108. 19 interactors.
STRINGi316385.ECDH10B_1570.

Structurei

3D structure databases

ProteinModelPortaliP76108.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4107TYH. Bacteria.
ENOG410XUAZ. LUCA.
HOGENOMiHOG000283673.
KOiK02055.
PhylomeDBiP76108.

Family and domain databases

InterProiView protein in InterPro
IPR001188. Sperm_putr-bd.
PRINTSiPR00909. SPERMDNBNDNG.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P76108-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKTFARSSL CALSMTIMTA HAAEPPTNLD KPEGRLDIIA WPGYIERGQT
60 70 80 90 100
DKQYDWVTQF EKETGCAVNV KTAATSDEMV SLMTKGGYDL VTASGDASLR
110 120 130 140 150
LIMGKRVQPI NTALIPNWKT LDPRVVKGDW FNVGGKVYGT PYQWGPNLLM
160 170 180 190 200
YNTKTFPTPP DSWQVVFVEQ NLPDGKSNKG RVQAYDGPIY IADAALFVKA
210 220 230 240 250
TQPQLGISDP YQLTEEQYQA VLKVLRAQHS LIHRYWHDTT VQMSDFKNEG
260 270 280 290 300
VVASSAWPYQ ANALKAEGQP VATVFPKEGV TGWADTTMLH SEAKHPVCAY
310 320 330 340 350
KWMNWSLTPK VQGDVAAWFG SLPVVPEGCK ASPLLGEKGC ETNGFNYFDK
360 370 380
IAFWKTPIAE GGKFVPYSRW TQDYIAIMGG R
Length:381
Mass (Da):42,295
Last modified:February 1, 1997 - v1
Checksum:iFC5072B0B52CFB05
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74522.1.
AP009048 Genomic DNA. Translation: BAE76440.1.
PIRiC64896.
RefSeqiNP_415957.1. NC_000913.3.
WP_000047424.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74522; AAC74522; b1440.
BAE76440; BAE76440; BAE76440.
GeneIDi946005.
KEGGiecj:JW1435.
eco:b1440.
PATRICifig|1411691.4.peg.828.

Similar proteinsi

Entry informationi

Entry nameiYDCS_ECOLI
AccessioniPrimary (citable) accession number: P76108
Secondary accession number(s): Q2MBB6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: February 1, 1997
Last modified: August 30, 2017
This is version 121 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families