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Protein

Putative ABC transporter periplasmic-binding protein YdcS

Gene

ydcS

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Probably part of the binding-protein-dependent transport system YdcSTUV.

GO - Molecular functioni

  1. polyamine binding Source: InterPro
  2. transporter activity Source: InterPro

GO - Biological processi

  1. polyamine transport Source: InterPro
Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciEcoCyc:YDCS-MONOMER.
ECOL316407:JW1435-MONOMER.
RETL1328306-WGS:GSTH-3734-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative ABC transporter periplasmic-binding protein YdcS
Gene namesi
Name:ydcS
Ordered Locus Names:b1440, JW1435
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000000318 Componenti: Chromosome UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13762. ydcS.

Subcellular locationi

Periplasm By similarity

GO - Cellular componenti

  1. periplasmic space Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Periplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2222Sequence AnalysisAdd
BLAST
Chaini23 – 381359Putative ABC transporter periplasmic-binding protein YdcSPRO_0000031843Add
BLAST

Proteomic databases

PaxDbiP76108.
PRIDEiP76108.

Expressioni

Gene expression databases

GenevestigatoriP76108.

Interactioni

Protein-protein interaction databases

IntActiP76108. 19 interactions.
STRINGi511145.b1440.

Structurei

3D structure databases

ProteinModelPortaliP76108.
SMRiP76108. Positions 36-337.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiCOG0687.
HOGENOMiHOG000283673.
KOiK02055.
OMAiDWVTGFE.
OrthoDBiEOG6C2WCR.
PhylomeDBiP76108.

Family and domain databases

InterProiIPR006059. SBP_1_dom.
IPR001188. Sperm_putr-bd.
[Graphical view]
PANTHERiPTHR30222:SF5. PTHR30222:SF5. 1 hit.
PfamiPF01547. SBP_bac_1. 1 hit.
[Graphical view]
PRINTSiPR00909. SPERMDNBNDNG.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P76108-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKTFARSSL CALSMTIMTA HAAEPPTNLD KPEGRLDIIA WPGYIERGQT
60 70 80 90 100
DKQYDWVTQF EKETGCAVNV KTAATSDEMV SLMTKGGYDL VTASGDASLR
110 120 130 140 150
LIMGKRVQPI NTALIPNWKT LDPRVVKGDW FNVGGKVYGT PYQWGPNLLM
160 170 180 190 200
YNTKTFPTPP DSWQVVFVEQ NLPDGKSNKG RVQAYDGPIY IADAALFVKA
210 220 230 240 250
TQPQLGISDP YQLTEEQYQA VLKVLRAQHS LIHRYWHDTT VQMSDFKNEG
260 270 280 290 300
VVASSAWPYQ ANALKAEGQP VATVFPKEGV TGWADTTMLH SEAKHPVCAY
310 320 330 340 350
KWMNWSLTPK VQGDVAAWFG SLPVVPEGCK ASPLLGEKGC ETNGFNYFDK
360 370 380
IAFWKTPIAE GGKFVPYSRW TQDYIAIMGG R
Length:381
Mass (Da):42,295
Last modified:February 1, 1997 - v1
Checksum:iFC5072B0B52CFB05
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74522.1.
AP009048 Genomic DNA. Translation: BAE76440.1.
PIRiC64896.
RefSeqiNP_415957.1. NC_000913.3.
YP_489705.1. NC_007779.1.

Genome annotation databases

EnsemblBacteriaiAAC74522; AAC74522; b1440.
BAE76440; BAE76440; BAE76440.
GeneIDi12933902.
946005.
KEGGiecj:Y75_p1416.
eco:b1440.
PATRICi32118170. VBIEscCol129921_1505.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74522.1.
AP009048 Genomic DNA. Translation: BAE76440.1.
PIRiC64896.
RefSeqiNP_415957.1. NC_000913.3.
YP_489705.1. NC_007779.1.

3D structure databases

ProteinModelPortaliP76108.
SMRiP76108. Positions 36-337.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP76108. 19 interactions.
STRINGi511145.b1440.

Proteomic databases

PaxDbiP76108.
PRIDEiP76108.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74522; AAC74522; b1440.
BAE76440; BAE76440; BAE76440.
GeneIDi12933902.
946005.
KEGGiecj:Y75_p1416.
eco:b1440.
PATRICi32118170. VBIEscCol129921_1505.

Organism-specific databases

EchoBASEiEB3525.
EcoGeneiEG13762. ydcS.

Phylogenomic databases

eggNOGiCOG0687.
HOGENOMiHOG000283673.
KOiK02055.
OMAiDWVTGFE.
OrthoDBiEOG6C2WCR.
PhylomeDBiP76108.

Enzyme and pathway databases

BioCyciEcoCyc:YDCS-MONOMER.
ECOL316407:JW1435-MONOMER.
RETL1328306-WGS:GSTH-3734-MONOMER.

Miscellaneous databases

PROiP76108.

Gene expression databases

GenevestigatoriP76108.

Family and domain databases

InterProiIPR006059. SBP_1_dom.
IPR001188. Sperm_putr-bd.
[Graphical view]
PANTHERiPTHR30222:SF5. PTHR30222:SF5. 1 hit.
PfamiPF01547. SBP_bac_1. 1 hit.
[Graphical view]
PRINTSiPR00909. SPERMDNBNDNG.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYDCS_ECOLI
AccessioniPrimary (citable) accession number: P76108
Secondary accession number(s): Q2MBB6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: February 1, 1997
Last modified: January 7, 2015
This is version 105 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.