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P76108

- YDCS_ECOLI

UniProt

P76108 - YDCS_ECOLI

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Protein

Putative ABC transporter periplasmic-binding protein YdcS

Gene

ydcS

Organism
Escherichia coli (strain K12)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Probably part of the binding-protein-dependent transport system YdcSTUV.

GO - Molecular functioni

  1. polyamine binding Source: InterPro
  2. transporter activity Source: InterPro

GO - Biological processi

  1. polyamine transport Source: InterPro
Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciEcoCyc:YDCS-MONOMER.
ECOL316407:JW1435-MONOMER.
RETL1328306-WGS:GSTH-3734-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative ABC transporter periplasmic-binding protein YdcS
Gene namesi
Name:ydcS
Ordered Locus Names:b1440, JW1435
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000000318: Chromosome, UP000000625: Chromosome

Organism-specific databases

EcoGeneiEG13762. ydcS.

Subcellular locationi

Periplasm By similarity

GO - Cellular componenti

  1. periplasmic space Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Periplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2222Sequence AnalysisAdd
BLAST
Chaini23 – 381359Putative ABC transporter periplasmic-binding protein YdcSPRO_0000031843Add
BLAST

Proteomic databases

PaxDbiP76108.
PRIDEiP76108.

Expressioni

Gene expression databases

GenevestigatoriP76108.

Interactioni

Protein-protein interaction databases

IntActiP76108. 19 interactions.
STRINGi511145.b1440.

Structurei

3D structure databases

ProteinModelPortaliP76108.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiCOG0687.
HOGENOMiHOG000283673.
KOiK02055.
OMAiEGCKAST.
OrthoDBiEOG6C2WCR.
PhylomeDBiP76108.

Family and domain databases

InterProiIPR006059. Solute-bd_1_bac.
IPR001188. Sperm_putr-bd.
[Graphical view]
PfamiPF01547. SBP_bac_1. 1 hit.
[Graphical view]
PRINTSiPR00909. SPERMDNBNDNG.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P76108-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSKTFARSSL CALSMTIMTA HAAEPPTNLD KPEGRLDIIA WPGYIERGQT
60 70 80 90 100
DKQYDWVTQF EKETGCAVNV KTAATSDEMV SLMTKGGYDL VTASGDASLR
110 120 130 140 150
LIMGKRVQPI NTALIPNWKT LDPRVVKGDW FNVGGKVYGT PYQWGPNLLM
160 170 180 190 200
YNTKTFPTPP DSWQVVFVEQ NLPDGKSNKG RVQAYDGPIY IADAALFVKA
210 220 230 240 250
TQPQLGISDP YQLTEEQYQA VLKVLRAQHS LIHRYWHDTT VQMSDFKNEG
260 270 280 290 300
VVASSAWPYQ ANALKAEGQP VATVFPKEGV TGWADTTMLH SEAKHPVCAY
310 320 330 340 350
KWMNWSLTPK VQGDVAAWFG SLPVVPEGCK ASPLLGEKGC ETNGFNYFDK
360 370 380
IAFWKTPIAE GGKFVPYSRW TQDYIAIMGG R
Length:381
Mass (Da):42,295
Last modified:February 1, 1997 - v1
Checksum:iFC5072B0B52CFB05
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74522.1.
AP009048 Genomic DNA. Translation: BAE76440.1.
PIRiC64896.
RefSeqiNP_415957.1. NC_000913.3.
YP_489705.1. NC_007779.1.

Genome annotation databases

EnsemblBacteriaiAAC74522; AAC74522; b1440.
BAE76440; BAE76440; BAE76440.
GeneIDi12933902.
946005.
KEGGiecj:Y75_p1416.
eco:b1440.
PATRICi32118170. VBIEscCol129921_1505.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74522.1 .
AP009048 Genomic DNA. Translation: BAE76440.1 .
PIRi C64896.
RefSeqi NP_415957.1. NC_000913.3.
YP_489705.1. NC_007779.1.

3D structure databases

ProteinModelPortali P76108.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi P76108. 19 interactions.
STRINGi 511145.b1440.

Proteomic databases

PaxDbi P76108.
PRIDEi P76108.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAC74522 ; AAC74522 ; b1440 .
BAE76440 ; BAE76440 ; BAE76440 .
GeneIDi 12933902.
946005.
KEGGi ecj:Y75_p1416.
eco:b1440.
PATRICi 32118170. VBIEscCol129921_1505.

Organism-specific databases

EchoBASEi EB3525.
EcoGenei EG13762. ydcS.

Phylogenomic databases

eggNOGi COG0687.
HOGENOMi HOG000283673.
KOi K02055.
OMAi EGCKAST.
OrthoDBi EOG6C2WCR.
PhylomeDBi P76108.

Enzyme and pathway databases

BioCyci EcoCyc:YDCS-MONOMER.
ECOL316407:JW1435-MONOMER.
RETL1328306-WGS:GSTH-3734-MONOMER.

Miscellaneous databases

PROi P76108.

Gene expression databases

Genevestigatori P76108.

Family and domain databases

InterProi IPR006059. Solute-bd_1_bac.
IPR001188. Sperm_putr-bd.
[Graphical view ]
Pfami PF01547. SBP_bac_1. 1 hit.
[Graphical view ]
PRINTSi PR00909. SPERMDNBNDNG.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYDCS_ECOLI
AccessioniPrimary (citable) accession number: P76108
Secondary accession number(s): Q2MBB6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: February 1, 1997
Last modified: October 29, 2014
This is version 104 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3