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Protein

Uncharacterized protease YdcP

Gene

ydcP

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protease

Enzyme and pathway databases

BioCyciEcoCyc:G6746-MONOMER.
ECOL316407:JW1431-MONOMER.

Protein family/group databases

MEROPSiU32.003.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protease YdcP (EC:3.4.-.-)
Gene namesi
Name:ydcP
Ordered Locus Names:b1435, JW1431
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13759. ydcP.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2020Sequence analysisAdd
BLAST
Chaini21 – 653633Uncharacterized protease YdcPPRO_0000028524Add
BLAST

Proteomic databases

PaxDbiP76104.
PRIDEiP76104.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
recNP058242EBI-556974,EBI-548098

Protein-protein interaction databases

BioGridi4263353. 10 interactions.
DIPiDIP-11650N.
IntActiP76104. 50 interactions.
MINTiMINT-1229370.
STRINGi511145.b1435.

Structurei

3D structure databases

ProteinModelPortaliP76104.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the peptidase U32 family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105CFP. Bacteria.
COG0826. LUCA.
HOGENOMiHOG000273229.
InParanoidiP76104.
KOiK08303.
OMAiSGQCNIS.
OrthoDBiEOG6ZD667.
PhylomeDBiP76104.

Family and domain databases

InterProiIPR020988. Pept_U32_collagenase.
IPR001539. Peptidase_U32.
[Graphical view]
PfamiPF12392. DUF3656. 1 hit.
PF01136. Peptidase_U32. 1 hit.
[Graphical view]
PROSITEiPS01276. PEPTIDASE_U32. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P76104-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTVSSHRLEL LSPARDAAIA REAILHGADA VYIGGPGFGA RHNASNSLKD
60 70 80 90 100
IAELVPFAHR YGAKIFVTLN TILHDDELEP AQRLITDLYQ TGVDALIVQD
110 120 130 140 150
MGILELDIPP IELHASTQCD IRTVEKAKFL SDVGFTQIVL ARELNLDQIR
160 170 180 190 200
AIHQATDATI EFFIHGALCV AYSGQCYISH AQTGRSANRG DCSQACRLPY
210 220 230 240 250
TLKDDQGRVV SYEKHLLSMK DNDQTANLGA LIDAGVRSFK IEGRYKDMSY
260 270 280 290 300
VKNITAHYRQ MLDAIIEERG DLARASSGRT EHFFVPSTEK TFHRGSTDYF
310 320 330 340 350
VNARKGDIGA FDSPKFIGLP VGEVVKVAKD HLDVAVTEPL ANGDGLNVLI
360 370 380 390 400
KREVVGFRAN TVEKTGENQY RVWPNEMPAD LHKIRPHHPL NRNLDHNWQQ
410 420 430 440 450
ALTKTSSERR VAVDIELGGW QEQLILTLTS EEGVSITHTL DGQFDEANNA
460 470 480 490 500
EKAMNNLKDG LAKLGQTLYY ARDVQINLPG ALFVPNSLLN QFRREAADML
510 520 530 540 550
DAARLASYQR GSRKPVADPA PVYPQTHLSF LANVYNQKAR EFYHRYGVQL
560 570 580 590 600
IDAAYEAHEE KGEVPVMITK HCLRFAFNLC PKQAKGNIKS WKATPMQLVN
610 620 630 640 650
GDEVLTLKFD CRPCEMHVIG KIKNHILKMP LPGSVVASVS PDELLKTLPK

RKG
Length:653
Mass (Da):72,702
Last modified:November 1, 1997 - v2
Checksum:i5875B4E9C2F4FC82
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74517.2.
AP009048 Genomic DNA. Translation: BAA15068.1.
RefSeqiNP_415952.2. NC_000913.3.
WP_001303492.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74517; AAC74517; b1435.
BAA15068; BAA15068; BAA15068.
GeneIDi945993.
KEGGiecj:JW1431.
eco:b1435.
PATRICi32118160. VBIEscCol129921_1500.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74517.2.
AP009048 Genomic DNA. Translation: BAA15068.1.
RefSeqiNP_415952.2. NC_000913.3.
WP_001303492.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76104.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263353. 10 interactions.
DIPiDIP-11650N.
IntActiP76104. 50 interactions.
MINTiMINT-1229370.
STRINGi511145.b1435.

Protein family/group databases

MEROPSiU32.003.

Proteomic databases

PaxDbiP76104.
PRIDEiP76104.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74517; AAC74517; b1435.
BAA15068; BAA15068; BAA15068.
GeneIDi945993.
KEGGiecj:JW1431.
eco:b1435.
PATRICi32118160. VBIEscCol129921_1500.

Organism-specific databases

EchoBASEiEB3522.
EcoGeneiEG13759. ydcP.

Phylogenomic databases

eggNOGiENOG4105CFP. Bacteria.
COG0826. LUCA.
HOGENOMiHOG000273229.
InParanoidiP76104.
KOiK08303.
OMAiSGQCNIS.
OrthoDBiEOG6ZD667.
PhylomeDBiP76104.

Enzyme and pathway databases

BioCyciEcoCyc:G6746-MONOMER.
ECOL316407:JW1431-MONOMER.

Miscellaneous databases

PROiP76104.

Family and domain databases

InterProiIPR020988. Pept_U32_collagenase.
IPR001539. Peptidase_U32.
[Graphical view]
PfamiPF12392. DUF3656. 1 hit.
PF01136. Peptidase_U32. 1 hit.
[Graphical view]
PROSITEiPS01276. PEPTIDASE_U32. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYDCP_ECOLI
AccessioniPrimary (citable) accession number: P76104
Secondary accession number(s): P76865, P76867, P76868
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: January 20, 2016
This is version 108 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. Peptidase families
    Classification of peptidase families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.