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Protein

Inner membrane protein YdcO

Gene

ydcO

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Enzyme and pathway databases

BioCyciEcoCyc:B1433-MONOMER

Protein family/group databases

TCDBi2.A.46.1.9 the benzoate:h+ symporter (bene) family

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YdcO
Gene namesi
Name:ydcO
Ordered Locus Names:b1433, JW5229
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13758 ydcO

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 9CytoplasmicSequence analysis9
Transmembranei10 – 30HelicalSequence analysisAdd BLAST21
Topological domaini31 – 42PeriplasmicSequence analysisAdd BLAST12
Transmembranei43 – 63HelicalSequence analysisAdd BLAST21
Topological domaini64 – 93CytoplasmicSequence analysisAdd BLAST30
Transmembranei94 – 114HelicalSequence analysisAdd BLAST21
Topological domaini115 – 123PeriplasmicSequence analysis9
Transmembranei124 – 144HelicalSequence analysisAdd BLAST21
Topological domaini145 – 167CytoplasmicSequence analysisAdd BLAST23
Transmembranei168 – 188HelicalSequence analysisAdd BLAST21
Topological domaini189 – 200PeriplasmicSequence analysisAdd BLAST12
Transmembranei201 – 221HelicalSequence analysisAdd BLAST21
Topological domaini222 – 246CytoplasmicSequence analysisAdd BLAST25
Transmembranei247 – 267HelicalSequence analysisAdd BLAST21
Topological domaini268 – 287PeriplasmicSequence analysisAdd BLAST20
Transmembranei288 – 308HelicalSequence analysisAdd BLAST21
Topological domaini309 – 311CytoplasmicSequence analysis3
Transmembranei312 – 332HelicalSequence analysisAdd BLAST21
Topological domaini333 – 361PeriplasmicSequence analysisAdd BLAST29
Transmembranei362 – 382HelicalSequence analysisAdd BLAST21
Topological domaini383 – 391CytoplasmicSequence analysis9

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002013201 – 391Inner membrane protein YdcOAdd BLAST391

Proteomic databases

PaxDbiP76103
PRIDEiP76103

Interactioni

Protein-protein interaction databases

BioGridi4261752, 256 interactors
STRINGi316385.ECDH10B_1563

Structurei

3D structure databases

ProteinModelPortaliP76103
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105DKK Bacteria
COG3135 LUCA
HOGENOMiHOG000221975
InParanoidiP76103
KOiK05782
OMAiMTSQNMP
PhylomeDBiP76103

Family and domain databases

InterProiView protein in InterPro
IPR004711 Benzoate_Transporter
PANTHERiPTHR30199 PTHR30199, 1 hit
PfamiView protein in Pfam
PF03594 BenE, 1 hit
TIGRFAMsiTIGR00843 benE, 1 hit
PROSITEiView protein in PROSITE
PS00041 HTH_ARAC_FAMILY_1, 1 hit

Sequencei

Sequence statusi: Complete.

P76103-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRLFSIPPPT LLAGFLAVLI GYASSAAIIW QAAIVAGATT AQISGWMTAL
60 70 80 90 100
GLAMGVSTLT LTLWYRVPVL TAWSTPGAAL LVTGLQGLTL NEAIGVFIVT
110 120 130 140 150
NALIVLCGIT GLFARLMRII PHSLAAAMLA GILLRFGLQA FASLDGQFTL
160 170 180 190 200
CGSMLLVWLA TKAVAPRYAV IAAMIIGIVI VIAQGDVVTT DVVFKPVLPT
210 220 230 240 250
YITPDFSFAH SLSVALPLFL VTMASQNAPG IAAMKAAGYS APVSPLIVFT
260 270 280 290 300
GLLALVFSPF GVYSVGIAAI TAAICQSPEA HPDKDQRWLA AAVAGIFYLL
310 320 330 340 350
AGLFGSAITG MMAALPVSWI QMLAGLALLS TIGGSLYQAL HNERERDAAV
360 370 380 390
VAFLVTASGL TLVGIGSAFW GLIAGGVCYV VLNLIADRNR Y
Length:391
Mass (Da):40,583
Last modified:March 27, 2002 - v2
Checksum:iECA73015E1B7D1A8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC74515.2
AP009048 Genomic DNA Translation: BAA15061.2
PIRiD64895
RefSeqiNP_415950.4, NC_000913.3

Genome annotation databases

EnsemblBacteriaiAAC74515; AAC74515; b1433
BAA15061; BAA15061; BAA15061
GeneIDi947247
KEGGiecj:JW5229
eco:b1433
PATRICifig|1411691.4.peg.836

Similar proteinsi

Entry informationi

Entry nameiYDCO_ECOLI
AccessioniPrimary (citable) accession number: P76103
Secondary accession number(s): P77540
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 27, 2002
Last sequence update: March 27, 2002
Last modified: March 28, 2018
This is version 122 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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