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Protein

Inner membrane protein YdcO

Gene

ydcO

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:B1433-MONOMER.
ECOL316407:JW5229-MONOMER.
RETL1328306-WGS:GSTH-3110-MONOMER.

Protein family/group databases

TCDBi2.A.46.1.9. the benzoate:h+ symporter (bene) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YdcO
Gene namesi
Name:ydcO
Ordered Locus Names:b1433, JW5229
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13758. ydcO.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 99CytoplasmicSequence analysis
Transmembranei10 – 3021HelicalSequence analysisAdd
BLAST
Topological domaini31 – 4212PeriplasmicSequence analysisAdd
BLAST
Transmembranei43 – 6321HelicalSequence analysisAdd
BLAST
Topological domaini64 – 9330CytoplasmicSequence analysisAdd
BLAST
Transmembranei94 – 11421HelicalSequence analysisAdd
BLAST
Topological domaini115 – 1239PeriplasmicSequence analysis
Transmembranei124 – 14421HelicalSequence analysisAdd
BLAST
Topological domaini145 – 16723CytoplasmicSequence analysisAdd
BLAST
Transmembranei168 – 18821HelicalSequence analysisAdd
BLAST
Topological domaini189 – 20012PeriplasmicSequence analysisAdd
BLAST
Transmembranei201 – 22121HelicalSequence analysisAdd
BLAST
Topological domaini222 – 24625CytoplasmicSequence analysisAdd
BLAST
Transmembranei247 – 26721HelicalSequence analysisAdd
BLAST
Topological domaini268 – 28720PeriplasmicSequence analysisAdd
BLAST
Transmembranei288 – 30821HelicalSequence analysisAdd
BLAST
Topological domaini309 – 3113CytoplasmicSequence analysis
Transmembranei312 – 33221HelicalSequence analysisAdd
BLAST
Topological domaini333 – 36129PeriplasmicSequence analysisAdd
BLAST
Transmembranei362 – 38221HelicalSequence analysisAdd
BLAST
Topological domaini383 – 3919CytoplasmicSequence analysis

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 391391Inner membrane protein YdcOPRO_0000201320Add
BLAST

Proteomic databases

PaxDbiP76103.

Interactioni

Protein-protein interaction databases

BioGridi4261752. 256 interactions.
STRINGi511145.b1433.

Structurei

3D structure databases

ProteinModelPortaliP76103.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105DKK. Bacteria.
COG3135. LUCA.
HOGENOMiHOG000221975.
InParanoidiP76103.
KOiK05782.
OMAiAIVFQAA.
OrthoDBiEOG6MD91D.
PhylomeDBiP76103.

Family and domain databases

InterProiIPR004711. Benzoate_Transporter.
[Graphical view]
PANTHERiPTHR30199:SF0. PTHR30199:SF0. 1 hit.
PfamiPF03594. BenE. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00843. benE. 1 hit.
PROSITEiPS00041. HTH_ARAC_FAMILY_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P76103-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRLFSIPPPT LLAGFLAVLI GYASSAAIIW QAAIVAGATT AQISGWMTAL
60 70 80 90 100
GLAMGVSTLT LTLWYRVPVL TAWSTPGAAL LVTGLQGLTL NEAIGVFIVT
110 120 130 140 150
NALIVLCGIT GLFARLMRII PHSLAAAMLA GILLRFGLQA FASLDGQFTL
160 170 180 190 200
CGSMLLVWLA TKAVAPRYAV IAAMIIGIVI VIAQGDVVTT DVVFKPVLPT
210 220 230 240 250
YITPDFSFAH SLSVALPLFL VTMASQNAPG IAAMKAAGYS APVSPLIVFT
260 270 280 290 300
GLLALVFSPF GVYSVGIAAI TAAICQSPEA HPDKDQRWLA AAVAGIFYLL
310 320 330 340 350
AGLFGSAITG MMAALPVSWI QMLAGLALLS TIGGSLYQAL HNERERDAAV
360 370 380 390
VAFLVTASGL TLVGIGSAFW GLIAGGVCYV VLNLIADRNR Y
Length:391
Mass (Da):40,583
Last modified:March 27, 2002 - v2
Checksum:iECA73015E1B7D1A8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74515.2.
AP009048 Genomic DNA. Translation: BAA15061.2.
PIRiD64895.
RefSeqiNP_415950.4. NC_000913.3.
WP_001236265.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74515; AAC74515; b1433.
BAA15061; BAA15061; BAA15061.
GeneIDi947247.
KEGGiecj:JW5229.
eco:b1433.
PATRICi32118156. VBIEscCol129921_1498.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74515.2.
AP009048 Genomic DNA. Translation: BAA15061.2.
PIRiD64895.
RefSeqiNP_415950.4. NC_000913.3.
WP_001236265.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76103.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261752. 256 interactions.
STRINGi511145.b1433.

Protein family/group databases

TCDBi2.A.46.1.9. the benzoate:h+ symporter (bene) family.

Proteomic databases

PaxDbiP76103.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74515; AAC74515; b1433.
BAA15061; BAA15061; BAA15061.
GeneIDi947247.
KEGGiecj:JW5229.
eco:b1433.
PATRICi32118156. VBIEscCol129921_1498.

Organism-specific databases

EchoBASEiEB3521.
EcoGeneiEG13758. ydcO.

Phylogenomic databases

eggNOGiENOG4105DKK. Bacteria.
COG3135. LUCA.
HOGENOMiHOG000221975.
InParanoidiP76103.
KOiK05782.
OMAiAIVFQAA.
OrthoDBiEOG6MD91D.
PhylomeDBiP76103.

Enzyme and pathway databases

BioCyciEcoCyc:B1433-MONOMER.
ECOL316407:JW5229-MONOMER.
RETL1328306-WGS:GSTH-3110-MONOMER.

Miscellaneous databases

PROiP76103.

Family and domain databases

InterProiIPR004711. Benzoate_Transporter.
[Graphical view]
PANTHERiPTHR30199:SF0. PTHR30199:SF0. 1 hit.
PfamiPF03594. BenE. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00843. benE. 1 hit.
PROSITEiPS00041. HTH_ARAC_FAMILY_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYDCO_ECOLI
AccessioniPrimary (citable) accession number: P76103
Secondary accession number(s): P77540
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 27, 2002
Last sequence update: March 27, 2002
Last modified: January 20, 2016
This is version 113 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.