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Protein

Uncharacterized protein YnbD

Gene

ynbD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6730-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YnbD
Gene namesi
Name:ynbD
Ordered Locus Names:b1411, JW1408
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13751 ynbD

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei2 – 22HelicalSequence analysisAdd BLAST21
Transmembranei46 – 66HelicalSequence analysisAdd BLAST21
Transmembranei85 – 105HelicalSequence analysisAdd BLAST21
Transmembranei175 – 195HelicalSequence analysisAdd BLAST21
Transmembranei209 – 229HelicalSequence analysisAdd BLAST21
Transmembranei230 – 250HelicalSequence analysisAdd BLAST21
Transmembranei372 – 392HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000949291 – 430Uncharacterized protein YnbDAdd BLAST430

Proteomic databases

PaxDbiP76093
PRIDEiP76093

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
glmSP171694EBI-551038,EBI-551022

Protein-protein interaction databases

BioGridi4263024, 21 interactors
DIPiDIP-12745N
IntActiP76093, 2 interactors
STRINGi316385.ECDH10B_1537

Structurei

3D structure databases

ProteinModelPortaliP76093
SMRiP76093
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG41077RS Bacteria
COG0671 LUCA
COG2453 LUCA
HOGENOMiHOG000259044
InParanoidiP76093
OMAiQHHFIDI

Family and domain databases

CDDicd00127 DSPc, 1 hit
Gene3Di3.90.190.10, 1 hit
InterProiView protein in InterPro
IPR000340 Dual-sp_phosphatase_cat-dom
IPR024950 DUSP
IPR029021 Prot-tyrosine_phosphatase-like
IPR016130 Tyr_Pase_AS
IPR003595 Tyr_Pase_cat
IPR000387 TYR_PHOSPHATASE_dom
IPR020422 TYR_PHOSPHATASE_DUAL_dom
PANTHERiPTHR10159 PTHR10159, 1 hit
PfamiView protein in Pfam
PF00782 DSPc, 1 hit
SMARTiView protein in SMART
SM00195 DSPc, 1 hit
SM00404 PTPc_motif, 1 hit
SUPFAMiSSF52799 SSF52799, 1 hit
PROSITEiView protein in PROSITE
PS00383 TYR_PHOSPHATASE_1, 1 hit
PS50056 TYR_PHOSPHATASE_2, 1 hit

Sequencei

Sequence statusi: Complete.

P76093-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLQGAGWLLL LAPFFFFTYG SLNQFTAVQD LNSHDIPSQV FGWETAIPFL
60 70 80 90 100
PWTIVPYWSL DLLYGFSLFV CSTTFEQRRL VHRLILATVM ACCGFLLYPL
110 120 130 140 150
KFSFIRPEVS GVTGWLFSQL ELFDLPYNQS PSLHIILCWL LWRHFRQHLA
160 170 180 190 200
ERWRKVCGGW FLLIAISTLT TWQHHFIDVI TGLAVGMLID WMVPVDRRWN
210 220 230 240 250
YQKPDQRRIK IALPYVVGAG SCIVLMELMM MIQLWWSVWL CWPVLSLLII
260 270 280 290 300
GRGYGGLGAI TTGKDSQGKL PPAVYWLTLP CRIGMWLSMR WFCRRLEPVS
310 320 330 340 350
KMTAGVYLGA FPRHIPAQNA VLDVTFEFPR GRATKDRLYF CVPMLDLVVP
360 370 380 390 400
EEGELRQAVA MLETLREEQG SVLVHCALGL SRSALVVAAW LLCYGHCKTV
410 420 430
NEAISYIRAR RPQIVLTDEH KAMLRLWENR
Length:430
Mass (Da):49,563
Last modified:February 1, 1997 - v1
Checksum:i7707978DD3F05EB8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC74493.1
AP009048 Genomic DNA Translation: BAE76432.1
D85081 Genomic DNA Translation: BAA25407.1
PIRiF64892
RefSeqiNP_415929.1, NC_000913.3
WP_001375099.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC74493; AAC74493; b1411
BAE76432; BAE76432; BAE76432
GeneIDi945985
KEGGiecj:JW1408
eco:b1411
PATRICifig|511145.12.peg.1474

Similar proteinsi

Entry informationi

Entry nameiYNBD_ECOLI
AccessioniPrimary (citable) accession number: P76093
Secondary accession number(s): Q2MBC4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: April 25, 2018
This is version 132 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health