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Protein

Uncharacterized protein YnbD

Gene

ynbD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G6730-MONOMER.
ECOL316407:JW1408-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YnbD
Gene namesi
Name:ynbD
Ordered Locus Names:b1411, JW1408
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13751. ynbD.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei2 – 22HelicalSequence analysisAdd BLAST21
Transmembranei46 – 66HelicalSequence analysisAdd BLAST21
Transmembranei85 – 105HelicalSequence analysisAdd BLAST21
Transmembranei175 – 195HelicalSequence analysisAdd BLAST21
Transmembranei209 – 229HelicalSequence analysisAdd BLAST21
Transmembranei230 – 250HelicalSequence analysisAdd BLAST21
Transmembranei372 – 392HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

  • integral component of plasma membrane Source: EcoliWiki
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000949291 – 430Uncharacterized protein YnbDAdd BLAST430

Proteomic databases

PaxDbiP76093.
PRIDEiP76093.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
glmSP171693EBI-551038,EBI-551022

Protein-protein interaction databases

BioGridi4263024. 21 interactors.
DIPiDIP-12745N.
IntActiP76093. 2 interactors.
MINTiMINT-1248050.
STRINGi511145.b1411.

Structurei

3D structure databases

ProteinModelPortaliP76093.
SMRiP76093.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG41077RS. Bacteria.
COG0671. LUCA.
COG2453. LUCA.
HOGENOMiHOG000259044.
InParanoidiP76093.
OMAiQHHFIDI.

Family and domain databases

CDDicd00127. DSPc. 1 hit.
Gene3Di3.90.190.10. 1 hit.
InterProiIPR000340. Dual-sp_phosphatase_cat-dom.
IPR024950. DUSP.
IPR029021. Prot-tyrosine_phosphatase-like.
IPR016130. Tyr_Pase_AS.
IPR003595. Tyr_Pase_cat.
IPR000387. TYR_PHOSPHATASE_dom.
IPR020422. TYR_PHOSPHATASE_DUAL_dom.
[Graphical view]
PANTHERiPTHR10159. PTHR10159. 2 hits.
PfamiPF00782. DSPc. 1 hit.
[Graphical view]
SMARTiSM00195. DSPc. 1 hit.
SM00404. PTPc_motif. 1 hit.
[Graphical view]
SUPFAMiSSF52799. SSF52799. 1 hit.
PROSITEiPS00383. TYR_PHOSPHATASE_1. 1 hit.
PS50056. TYR_PHOSPHATASE_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P76093-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLQGAGWLLL LAPFFFFTYG SLNQFTAVQD LNSHDIPSQV FGWETAIPFL
60 70 80 90 100
PWTIVPYWSL DLLYGFSLFV CSTTFEQRRL VHRLILATVM ACCGFLLYPL
110 120 130 140 150
KFSFIRPEVS GVTGWLFSQL ELFDLPYNQS PSLHIILCWL LWRHFRQHLA
160 170 180 190 200
ERWRKVCGGW FLLIAISTLT TWQHHFIDVI TGLAVGMLID WMVPVDRRWN
210 220 230 240 250
YQKPDQRRIK IALPYVVGAG SCIVLMELMM MIQLWWSVWL CWPVLSLLII
260 270 280 290 300
GRGYGGLGAI TTGKDSQGKL PPAVYWLTLP CRIGMWLSMR WFCRRLEPVS
310 320 330 340 350
KMTAGVYLGA FPRHIPAQNA VLDVTFEFPR GRATKDRLYF CVPMLDLVVP
360 370 380 390 400
EEGELRQAVA MLETLREEQG SVLVHCALGL SRSALVVAAW LLCYGHCKTV
410 420 430
NEAISYIRAR RPQIVLTDEH KAMLRLWENR
Length:430
Mass (Da):49,563
Last modified:February 1, 1997 - v1
Checksum:i7707978DD3F05EB8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74493.1.
AP009048 Genomic DNA. Translation: BAE76432.1.
D85081 Genomic DNA. Translation: BAA25407.1.
PIRiF64892.
RefSeqiNP_415929.1. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiAAC74493; AAC74493; b1411.
BAE76432; BAE76432; BAE76432.
GeneIDi945985.
KEGGiecj:JW1408.
eco:b1411.
PATRICi32118108. VBIEscCol129921_1474.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74493.1.
AP009048 Genomic DNA. Translation: BAE76432.1.
D85081 Genomic DNA. Translation: BAA25407.1.
PIRiF64892.
RefSeqiNP_415929.1. NC_000913.3.

3D structure databases

ProteinModelPortaliP76093.
SMRiP76093.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263024. 21 interactors.
DIPiDIP-12745N.
IntActiP76093. 2 interactors.
MINTiMINT-1248050.
STRINGi511145.b1411.

Proteomic databases

PaxDbiP76093.
PRIDEiP76093.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74493; AAC74493; b1411.
BAE76432; BAE76432; BAE76432.
GeneIDi945985.
KEGGiecj:JW1408.
eco:b1411.
PATRICi32118108. VBIEscCol129921_1474.

Organism-specific databases

EchoBASEiEB3514.
EcoGeneiEG13751. ynbD.

Phylogenomic databases

eggNOGiENOG41077RS. Bacteria.
COG0671. LUCA.
COG2453. LUCA.
HOGENOMiHOG000259044.
InParanoidiP76093.
OMAiQHHFIDI.

Enzyme and pathway databases

BioCyciEcoCyc:G6730-MONOMER.
ECOL316407:JW1408-MONOMER.

Miscellaneous databases

PROiP76093.

Family and domain databases

CDDicd00127. DSPc. 1 hit.
Gene3Di3.90.190.10. 1 hit.
InterProiIPR000340. Dual-sp_phosphatase_cat-dom.
IPR024950. DUSP.
IPR029021. Prot-tyrosine_phosphatase-like.
IPR016130. Tyr_Pase_AS.
IPR003595. Tyr_Pase_cat.
IPR000387. TYR_PHOSPHATASE_dom.
IPR020422. TYR_PHOSPHATASE_DUAL_dom.
[Graphical view]
PANTHERiPTHR10159. PTHR10159. 2 hits.
PfamiPF00782. DSPc. 1 hit.
[Graphical view]
SMARTiSM00195. DSPc. 1 hit.
SM00404. PTPc_motif. 1 hit.
[Graphical view]
SUPFAMiSSF52799. SSF52799. 1 hit.
PROSITEiPS00383. TYR_PHOSPHATASE_1. 1 hit.
PS50056. TYR_PHOSPHATASE_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYNBD_ECOLI
AccessioniPrimary (citable) accession number: P76093
Secondary accession number(s): Q2MBC4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: November 30, 2016
This is version 123 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.