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Protein

Uncharacterized protein YnbB

Gene

ynbB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Transferase

Enzyme and pathway databases

BioCyciEcoCyc:G6728-MONOMER.
ECOL316407:JW1406-MONOMER.
RETL1328306-WGS:GSTH-6942-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YnbB
Gene namesi
Name:ynbB
Ordered Locus Names:b1409, JW1406
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13749. ynbB.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei5 – 2521HelicalSequence analysisAdd
BLAST
Transmembranei52 – 7221HelicalSequence analysisAdd
BLAST
Transmembranei105 – 12521HelicalSequence analysisAdd
BLAST
Transmembranei138 – 15821HelicalSequence analysisAdd
BLAST
Transmembranei163 – 18321HelicalSequence analysisAdd
BLAST
Transmembranei208 – 22821HelicalSequence analysisAdd
BLAST
Transmembranei236 – 25621HelicalSequence analysisAdd
BLAST
Transmembranei273 – 29321HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 298298Uncharacterized protein YnbBPRO_0000090759Add
BLAST

Proteomic databases

PaxDbiP76091.

Interactioni

Protein-protein interaction databases

BioGridi4263022. 300 interactions.
DIPiDIP-12743N.
IntActiP76091. 1 interaction.
STRINGi511145.b1409.

Structurei

3D structure databases

ProteinModelPortaliP76091.
SMRiP76091. Positions 127-290.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the CDS family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4108HPI. Bacteria.
COG4589. LUCA.
HOGENOMiHOG000259010.
InParanoidiP76091.
KOiK00981.
OMAiFAPWHAF.
OrthoDBiEOG6TBHJT.
PhylomeDBiP76091.

Family and domain databases

InterProiIPR000374. PC_trans.
[Graphical view]
PROSITEiPS01315. CDS. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P76091-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLEKSLATLF ALLILATLIN RFLLWRLPER KGGEVTLRIR TWWGIVICFS
60 70 80 90 100
MVISGPRWMT LTFFALISFL ALKEYCTLIS VHFPRWLYWG IPLNYLLIGF
110 120 130 140 150
NCFELFLLFI PLAGFLILAT GQVLVGDPSG FLHTVSAIFW GWIMTVFALS
160 170 180 190 200
HAAWLLMLPT TNIQGGALLV LFLLALTESN DIAQYLWGKS CGRRKVVPKV
210 220 230 240 250
SPGKTLEGLM GGVITIMIAS LIIGPLLTPL NTLQALLAGL LIGISGFCGD
260 270 280 290
VVMSAIKRDI GVKDSGKLLP GHGGLLDRID SLIFTAPVFF YFIRYCCY
Length:298
Mass (Da):33,054
Last modified:February 1, 1997 - v1
Checksum:i8083BA7E3C07FADF
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti187 – 1871W → M (PubMed:9097039).Curated
Sequence conflicti190 – 1901S → I (PubMed:9097039).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74491.1.
AP009048 Genomic DNA. Translation: BAA15023.2.
PIRiD64892.
RefSeqiNP_415927.1. NC_000913.3.
WP_000890941.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74491; AAC74491; b1409.
BAA15023; BAA15023; BAA15023.
GeneIDi945972.
KEGGiecj:JW1406.
eco:b1409.
PATRICi32118104. VBIEscCol129921_1472.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74491.1.
AP009048 Genomic DNA. Translation: BAA15023.2.
PIRiD64892.
RefSeqiNP_415927.1. NC_000913.3.
WP_000890941.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76091.
SMRiP76091. Positions 127-290.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263022. 300 interactions.
DIPiDIP-12743N.
IntActiP76091. 1 interaction.
STRINGi511145.b1409.

Proteomic databases

PaxDbiP76091.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74491; AAC74491; b1409.
BAA15023; BAA15023; BAA15023.
GeneIDi945972.
KEGGiecj:JW1406.
eco:b1409.
PATRICi32118104. VBIEscCol129921_1472.

Organism-specific databases

EchoBASEiEB3512.
EcoGeneiEG13749. ynbB.

Phylogenomic databases

eggNOGiENOG4108HPI. Bacteria.
COG4589. LUCA.
HOGENOMiHOG000259010.
InParanoidiP76091.
KOiK00981.
OMAiFAPWHAF.
OrthoDBiEOG6TBHJT.
PhylomeDBiP76091.

Enzyme and pathway databases

BioCyciEcoCyc:G6728-MONOMER.
ECOL316407:JW1406-MONOMER.
RETL1328306-WGS:GSTH-6942-MONOMER.

Miscellaneous databases

PROiP76091.

Family and domain databases

InterProiIPR000374. PC_trans.
[Graphical view]
PROSITEiPS01315. CDS. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], SEQUENCE REVISION TO 187 AND 190.
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] OF 187-298.
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYNBB_ECOLI
AccessioniPrimary (citable) accession number: P76091
Secondary accession number(s): P78229
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: February 17, 2016
This is version 117 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.