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Protein

Inner membrane protein YnbA

Gene

ynbA

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G6727-MONOMER.
ECOL316407:JW1405-MONOMER.
RETL1328306-WGS:GSTH-3183-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YnbA
Gene namesi
Name:ynbA
Ordered Locus Names:b1408, JW1405
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13748. ynbA.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 4343PeriplasmicSequence analysisAdd
BLAST
Transmembranei44 – 6421HelicalSequence analysisAdd
BLAST
Topological domaini65 – 8420CytoplasmicSequence analysisAdd
BLAST
Transmembranei85 – 10723HelicalSequence analysisAdd
BLAST
Topological domaini108 – 1169PeriplasmicSequence analysis
Transmembranei117 – 13923HelicalSequence analysisAdd
BLAST
Topological domaini140 – 15112CytoplasmicSequence analysisAdd
BLAST
Transmembranei152 – 17221HelicalSequence analysisAdd
BLAST
Topological domaini173 – 1753PeriplasmicSequence analysis
Transmembranei176 – 19621HelicalSequence analysisAdd
BLAST
Topological domaini197 – 2015CytoplasmicSequence analysis

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 201201Inner membrane protein YnbAPRO_0000201335Add
BLAST

Proteomic databases

PaxDbiP76090.

Interactioni

Protein-protein interaction databases

BioGridi4263021. 20 interactions.
STRINGi511145.b1408.

Structurei

3D structure databases

ProteinModelPortaliP76090.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4108UMZ. Bacteria.
COG0558. LUCA.
HOGENOMiHOG000259022.
InParanoidiP76090.
OMAiQLKPRFQ.
OrthoDBiEOG69GZR5.
PhylomeDBiP76090.

Family and domain databases

InterProiIPR000462. CDP-OH_P_trans.
[Graphical view]
PfamiPF01066. CDP-OH_P_transf. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P76090-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTLYQIKPLF QSLLRPTMFW LYKHHVTANH ITLAALALSL LTGLLLMLAA
60 70 80 90 100
QPILFLLLPI VLFIRMALNA LDGMLARECN QQTRLGAILN ETGDVISDIA
110 120 130 140 150
LYLPFLFLPE SNASLVILML FCTILTEFCG LLAQTINGVR SYAGPFGKSD
160 170 180 190 200
RALIFGLWGL AVAIYPQWMQ WNNLLWSIAS ILLLWTAINR CRSVLLMSAE

I
Length:201
Mass (Da):22,524
Last modified:March 27, 2002 - v2
Checksum:iDD29F446B1F30097
GO

Sequence cautioni

The sequence BAA25405.1 differs from that shown. Reason: Frameshift at position 5. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D85081 Genomic DNA. Translation: BAA25405.1. Frameshift.
U00096 Genomic DNA. Translation: AAC74490.2.
AP009048 Genomic DNA. Translation: BAE76430.1.
PIRiC64892.
RefSeqiNP_415926.4. NC_000913.3.
WP_000177515.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74490; AAC74490; b1408.
BAE76430; BAE76430; BAE76430.
GeneIDi945973.
KEGGiecj:JW1405.
eco:b1408.
PATRICi32118102. VBIEscCol129921_1471.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D85081 Genomic DNA. Translation: BAA25405.1. Frameshift.
U00096 Genomic DNA. Translation: AAC74490.2.
AP009048 Genomic DNA. Translation: BAE76430.1.
PIRiC64892.
RefSeqiNP_415926.4. NC_000913.3.
WP_000177515.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76090.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263021. 20 interactions.
STRINGi511145.b1408.

Proteomic databases

PaxDbiP76090.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74490; AAC74490; b1408.
BAE76430; BAE76430; BAE76430.
GeneIDi945973.
KEGGiecj:JW1405.
eco:b1408.
PATRICi32118102. VBIEscCol129921_1471.

Organism-specific databases

EchoBASEiEB3511.
EcoGeneiEG13748. ynbA.

Phylogenomic databases

eggNOGiENOG4108UMZ. Bacteria.
COG0558. LUCA.
HOGENOMiHOG000259022.
InParanoidiP76090.
OMAiQLKPRFQ.
OrthoDBiEOG69GZR5.
PhylomeDBiP76090.

Enzyme and pathway databases

BioCyciEcoCyc:G6727-MONOMER.
ECOL316407:JW1405-MONOMER.
RETL1328306-WGS:GSTH-3183-MONOMER.

Miscellaneous databases

PROiP76090.

Family and domain databases

InterProiIPR000462. CDP-OH_P_trans.
[Graphical view]
PfamiPF01066. CDP-OH_P_transf. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Nucleotide sequence of the replication terminus region of Escherichia coli."
    Kitakawa M., Kasai H., Baba T., Honjo A., Isono K.
    Submitted (MAY-1996) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYNBA_ECOLI
AccessioniPrimary (citable) accession number: P76090
Secondary accession number(s): Q2MBC6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 27, 2002
Last sequence update: March 27, 2002
Last modified: January 20, 2016
This is version 108 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.