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Protein

Uncharacterized protein YcjR

Gene

ycjR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6652-MONOMER.
ECOL316407:JW5202-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YcjR
Gene namesi
Name:ycjR
Ordered Locus Names:b1314, JW5202
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13915. ycjR.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 262262Uncharacterized protein YcjRPRO_0000209108Add
BLAST

Proteomic databases

PaxDbiP76044.

Interactioni

Protein-protein interaction databases

BioGridi4263192. 18 interactions.
STRINGi511145.b1314.

Structurei

3D structure databases

ProteinModelPortaliP76044.
SMRiP76044. Positions 13-244.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the hyi family.Curated

Phylogenomic databases

eggNOGiENOG4107TYA. Bacteria.
COG1082. LUCA.
HOGENOMiHOG000089410.
InParanoidiP76044.
OMAiDATRECF.
PhylomeDBiP76044.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
[Graphical view]
PfamiPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
SUPFAMiSSF51658. SSF51658. 1 hit.

Sequencei

Sequence statusi: Complete.

P76044-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKIGTQNQAF FPENILEKFR YIKEMGFDGF EIDGKLLVNN IEEVKAAIKE
60 70 80 90 100
TGLPVTTACG GYDGWIGDFI EERRLNGLKQ IERILEALAE VGGKGIVVPA
110 120 130 140 150
AWGMFTFRLP PMTSPRSLDG DRKMVSDSLR VLEQVAARTG TVVYLEPLNR
160 170 180 190 200
YQDHMINTLA DARRYIVEND LKHVQIIGDF YHMNIEEDNL AQALHDNRDL
210 220 230 240 250
LGHVHIADNH RYQPGSGTLD FHALFEQLRA DNYQGYVVYE GRIRAEDPAQ
260
AYRDSLAWLR TC
Length:262
Mass (Da):29,832
Last modified:November 13, 2007 - v2
Checksum:i5E19C6FA47E14DF6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74396.2.
AP009048 Genomic DNA. Translation: BAE76399.1.
PIRiE64880.
RefSeqiNP_415830.2. NC_000913.3.
WP_000690229.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74396; AAC74396; b1314.
BAE76399; BAE76399; BAE76399.
GeneIDi947427.
KEGGiecj:JW5202.
eco:b1314.
PATRICi32117900. VBIEscCol129921_1370.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74396.2.
AP009048 Genomic DNA. Translation: BAE76399.1.
PIRiE64880.
RefSeqiNP_415830.2. NC_000913.3.
WP_000690229.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76044.
SMRiP76044. Positions 13-244.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263192. 18 interactions.
STRINGi511145.b1314.

Proteomic databases

PaxDbiP76044.

Protocols and materials databases

DNASUi947427.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74396; AAC74396; b1314.
BAE76399; BAE76399; BAE76399.
GeneIDi947427.
KEGGiecj:JW5202.
eco:b1314.
PATRICi32117900. VBIEscCol129921_1370.

Organism-specific databases

EchoBASEiEB3674.
EcoGeneiEG13915. ycjR.

Phylogenomic databases

eggNOGiENOG4107TYA. Bacteria.
COG1082. LUCA.
HOGENOMiHOG000089410.
InParanoidiP76044.
OMAiDATRECF.
PhylomeDBiP76044.

Enzyme and pathway databases

BioCyciEcoCyc:G6652-MONOMER.
ECOL316407:JW5202-MONOMER.

Miscellaneous databases

PROiP76044.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
[Graphical view]
PfamiPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
SUPFAMiSSF51658. SSF51658. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYCJR_ECOLI
AccessioniPrimary (citable) accession number: P76044
Secondary accession number(s): Q2MBF7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: November 13, 2007
Last modified: September 7, 2016
This is version 98 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.