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Protein

Putative ABC transporter periplasmic-binding protein YcjN

Gene

ycjN

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Probably part of the binding-protein-dependent transport system YcjNOP.

GO - Molecular functioni

Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciEcoCyc:YCJN-MONOMER.
ECOL316407:JW1303-MONOMER.

Protein family/group databases

TCDBi3.A.1.1.46. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative ABC transporter periplasmic-binding protein YcjN
Gene namesi
Name:ycjN
Ordered Locus Names:b1310, JW1303
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13911. ycjN.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Periplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 19Sequence analysisAdd BLAST19
ChainiPRO_000003171320 – 430Putative ABC transporter periplasmic-binding protein YcjNAdd BLAST411

Proteomic databases

PaxDbiP76042.
PRIDEiP76042.

Interactioni

Protein-protein interaction databases

BioGridi4263229. 49 interactors.
DIPiDIP-11605N.
IntActiP76042. 1 interactor.
STRINGi511145.b1310.

Structurei

3D structure databases

ProteinModelPortaliP76042.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105WEM. Bacteria.
COG1653. LUCA.
HOGENOMiHOG000089522.
InParanoidiP76042.
KOiK02027.
OMAiNKTHVSI.
PhylomeDBiP76042.

Family and domain databases

InterProiIPR006059. SBP_1_dom.
[Graphical view]
PfamiPF01547. SBP_bac_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P76042-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIKSKIVLLS ALVSCALISG CKEENKTNVS IEFMHSSVEQ ERQAVISKLI
60 70 80 90 100
ARFEKENPGI TVKQVPVEED AYNTKVITLS RSGSLPEVIE TSHDYAKVMD
110 120 130 140 150
KEQLIDRKAV ATVISNVGEG AFYDGVLRIV RTEDGSAWTG VPVSAWIGGI
160 170 180 190 200
WYRKDVLAKA GLEEPKNWQQ LLDVAQKLND PANKKYGIAL PTAESVLTEQ
210 220 230 240 250
SFSQFALSNQ ANVFNAEGKI TLDTPEMMQA LTYYRDLTAN TMPGSNDIME
260 270 280 290 300
VKDAFMNGTA PMAIYSTYIL PAVIKEGDPK NVGFVVPTEK NSAVYGMLTS
310 320 330 340 350
LTITAGQKTE ETEAAEKFVT FMEQADNIAD WVMMSPGAAL PVNKAVVTTA
360 370 380 390 400
TWKDNDVIKA LGELPNQLIG ELPNIQVFGA VGDKNFTRMG DVTGSGVVSS
410 420 430
MVHNVTVGKA DLSTTLQASQ KKLDELIEQH
Length:430
Mass (Da):46,808
Last modified:February 1, 1997 - v1
Checksum:iA0CC1409F7227482
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74392.1.
AP009048 Genomic DNA. Translation: BAE76398.1.
PIRiA64880.
RefSeqiNP_415826.1. NC_000913.3.
WP_000597466.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74392; AAC74392; b1310.
BAE76398; BAE76398; BAE76398.
GeneIDi945696.
KEGGiecj:JW1303.
eco:b1310.
PATRICi32117892. VBIEscCol129921_1366.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74392.1.
AP009048 Genomic DNA. Translation: BAE76398.1.
PIRiA64880.
RefSeqiNP_415826.1. NC_000913.3.
WP_000597466.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP76042.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263229. 49 interactors.
DIPiDIP-11605N.
IntActiP76042. 1 interactor.
STRINGi511145.b1310.

Protein family/group databases

TCDBi3.A.1.1.46. the atp-binding cassette (abc) superfamily.

Proteomic databases

PaxDbiP76042.
PRIDEiP76042.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74392; AAC74392; b1310.
BAE76398; BAE76398; BAE76398.
GeneIDi945696.
KEGGiecj:JW1303.
eco:b1310.
PATRICi32117892. VBIEscCol129921_1366.

Organism-specific databases

EchoBASEiEB3670.
EcoGeneiEG13911. ycjN.

Phylogenomic databases

eggNOGiENOG4105WEM. Bacteria.
COG1653. LUCA.
HOGENOMiHOG000089522.
InParanoidiP76042.
KOiK02027.
OMAiNKTHVSI.
PhylomeDBiP76042.

Enzyme and pathway databases

BioCyciEcoCyc:YCJN-MONOMER.
ECOL316407:JW1303-MONOMER.

Miscellaneous databases

PROiP76042.

Family and domain databases

InterProiIPR006059. SBP_1_dom.
[Graphical view]
PfamiPF01547. SBP_bac_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYCJN_ECOLI
AccessioniPrimary (citable) accession number: P76042
Secondary accession number(s): Q2MBF8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 27, 2001
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 114 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.