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Protein

Uncharacterized HTH-type transcriptional regulator YciT

Gene

yciT

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi18 – 37H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

  • cellular response to DNA damage stimulus Source: EcoliWiki
  • regulation of transcription, DNA-templated Source: EcoCyc
  • transcription, DNA-templated Source: EcoCyc

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:G6638-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YciT
Gene namesi
Name:yciT
Ordered Locus Names:b1284, JW1276
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13905. yciT.

Subcellular locationi

GO - Cellular componenti

  • cytosol Source: EcoCyc

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000502711 – 249Uncharacterized HTH-type transcriptional regulator YciTAdd BLAST249

Proteomic databases

PaxDbiP76034.
PRIDEiP76034.

Interactioni

Protein-protein interaction databases

BioGridi4260140. 9 interactors.
DIPiDIP-11592N.
IntActiP76034. 6 interactors.
STRINGi316385.ECDH10B_1401.

Structurei

3D structure databases

ProteinModelPortaliP76034.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 56HTH deoR-typePROSITE-ProRule annotationAdd BLAST56

Phylogenomic databases

eggNOGiENOG4105N2W. Bacteria.
COG1349. LUCA.
HOGENOMiHOG000224683.
InParanoidiP76034.
PhylomeDBiP76034.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR014036. DeoR_C.
IPR001034. DeoR_HTH.
IPR037171. NagB/RpiA_transferase-like.
IPR018356. Tscrpt_reg_HTH_DeoR_CS.
IPR036388. WH-like_DNA-bd_sf.
IPR036390. WH_DNA-bd_sf.
PfamiView protein in Pfam
PF00455. DeoRC. 1 hit.
PF08220. HTH_DeoR. 1 hit.
PRINTSiPR00037. HTHLACR.
SMARTiView protein in SMART
SM00420. HTH_DEOR. 1 hit.
SUPFAMiSSF100950. SSF100950. 1 hit.
SSF46785. SSF46785. 1 hit.
PROSITEiView protein in PROSITE
PS00894. HTH_DEOR_1. 1 hit.
PS51000. HTH_DEOR_2. 1 hit.

Sequencei

Sequence statusi: Complete.

P76034-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNSRQQTILQ MVIDQGQVSV TDLAKATGVS EVTIRQDLNT LEKLSYLRRA
60 70 80 90 100
HGFAVSLDSD DVETRMMSNY TLKRELAEFA ASLVQPGETI FIENGSSNAL
110 120 130 140 150
LARTLGEQKK NVTIITVSSY IAHLLKDAPC EVILLGGVYQ KKSESMVGPL
160 170 180 190 200
TRQCIQQVHF SKAFIGIDGW QPETGFTGRD MMRTDVVNAV LEKECEAIVL
210 220 230 240
TDSSKFGAVH SYSIGPVERF NRVITDSKIR ASDLMHLEHS KLTIHVVDI
Length:249
Mass (Da):27,603
Last modified:February 1, 1997 - v1
Checksum:iEBB5740C92347443
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74366.1.
AP009048 Genomic DNA. Translation: BAA14838.2.
PIRiG64876.
RefSeqiNP_415800.1. NC_000913.3.
WP_001088620.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74366; AAC74366; b1284.
BAA14838; BAA14838; BAA14838.
GeneIDi945869.
KEGGiecj:JW1276.
eco:b1284.
PATRICifig|1411691.4.peg.996.

Similar proteinsi

Entry informationi

Entry nameiYCIT_ECOLI
AccessioniPrimary (citable) accession number: P76034
Secondary accession number(s): P76837
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: November 22, 2017
This is version 133 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene