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Protein

Oligopeptide transport ATP-binding protein OppD

Gene

oppD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Part of the binding-protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi56 – 638ATPPROSITE-ProRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Peptide transport, Protein transport, Transport

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciEcoCyc:OPPD-MONOMER.
ECOL316407:JW1238-MONOMER.
MetaCyc:OPPD-MONOMER.

Protein family/group databases

TCDBi3.A.1.5.41. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
Oligopeptide transport ATP-binding protein OppD
Gene namesi
Name:oppD
Ordered Locus Names:b1246, JW1238
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG10677. oppD.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 337337Oligopeptide transport ATP-binding protein OppDPRO_0000092658Add
BLAST

Proteomic databases

EPDiP76027.
PaxDbiP76027.
PRIDEiP76027.

Interactioni

Protein-protein interaction databases

BioGridi4259494. 280 interactions.
DIPiDIP-10408N.
IntActiP76027. 3 interactions.
MINTiMINT-1300671.
STRINGi511145.b1246.

Structurei

3D structure databases

ProteinModelPortaliP76027.
SMRiP76027. Positions 19-317.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini20 – 269250ABC transporterPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the ABC transporter superfamily.Curated
Contains 1 ABC transporter domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105C3U. Bacteria.
COG0444. LUCA.
InParanoidiP76027.
KOiK15583.
OMAiEMFRVHQ.
OrthoDBiEOG6T7N3V.
PhylomeDBiP76027.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR013563. Oligopep_ABC_C.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00005. ABC_tran. 1 hit.
PF08352. oligo_HPY. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR01727. oligo_HPY. 1 hit.
PROSITEiPS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P76027-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSVIETATVP LAQQQADALL NVKDLRVTFS TPDGDVTAVN DLNFSLRAGE
60 70 80 90 100
TLGIVGESGS GKSQTAFALM GLLAANGRIG GSATFNGREI LNLPEHELNK
110 120 130 140 150
LRAEQISMIF QDPMTSLNPY MRVGEQLMEV LMLHKNMSKA EAFEESVRML
160 170 180 190 200
DAVKMPEARK RMKMYPHEFS GGMRQRVMIA MALLCRPKLL IADEPTTALD
210 220 230 240 250
VTVQAQIMTL LNELKREFNT AIIMITHDLV VVAGICDKVL VMYAGRTMEY
260 270 280 290 300
GNARDVFYQP VHPYSIGLLN AVPRLDAEGE TMLTIPGNPP NLLRLPKGCP
310 320 330
FQPRCPHAME ICSSAPPLEE FTPGRLRACF KPVEELL
Length:337
Mass (Da):37,188
Last modified:October 11, 2004 - v2
Checksum:iB64BAA2C5794F359
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAT48129.1.
AP009048 Genomic DNA. Translation: BAA14778.1.
PIRiA64872.
RefSeqiWP_000110948.1. NZ_LN832404.1.
YP_025300.1. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiAAT48129; AAT48129; b1246.
BAA14778; BAA14778; BAA14778.
GeneIDi945802.
KEGGiecj:JW1238.
eco:b1246.
PATRICi32117752. VBIEscCol129921_1296.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAT48129.1.
AP009048 Genomic DNA. Translation: BAA14778.1.
PIRiA64872.
RefSeqiWP_000110948.1. NZ_LN832404.1.
YP_025300.1. NC_000913.3.

3D structure databases

ProteinModelPortaliP76027.
SMRiP76027. Positions 19-317.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259494. 280 interactions.
DIPiDIP-10408N.
IntActiP76027. 3 interactions.
MINTiMINT-1300671.
STRINGi511145.b1246.

Protein family/group databases

TCDBi3.A.1.5.41. the atp-binding cassette (abc) superfamily.

Proteomic databases

EPDiP76027.
PaxDbiP76027.
PRIDEiP76027.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAT48129; AAT48129; b1246.
BAA14778; BAA14778; BAA14778.
GeneIDi945802.
KEGGiecj:JW1238.
eco:b1246.
PATRICi32117752. VBIEscCol129921_1296.

Organism-specific databases

EchoBASEiEB0671.
EcoGeneiEG10677. oppD.

Phylogenomic databases

eggNOGiENOG4105C3U. Bacteria.
COG0444. LUCA.
InParanoidiP76027.
KOiK15583.
OMAiEMFRVHQ.
OrthoDBiEOG6T7N3V.
PhylomeDBiP76027.

Enzyme and pathway databases

BioCyciEcoCyc:OPPD-MONOMER.
ECOL316407:JW1238-MONOMER.
MetaCyc:OPPD-MONOMER.

Miscellaneous databases

PROiP76027.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR013563. Oligopep_ABC_C.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamiPF00005. ABC_tran. 1 hit.
PF08352. oligo_HPY. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR01727. oligo_HPY. 1 hit.
PROSITEiPS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. Cited for: SEQUENCE REVISION TO 2.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiOPPD_ECOLI
AccessioniPrimary (citable) accession number: P76027
Secondary accession number(s): P77382
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: October 11, 2004
Last modified: March 16, 2016
This is version 130 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.