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Protein

Oligopeptide transport ATP-binding protein OppD

Gene

oppD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Part of the binding-protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi56 – 63ATPPROSITE-ProRule annotation8

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processPeptide transport, Protein transport, Transport
LigandATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciEcoCyc:OPPD-MONOMER.
MetaCyc:OPPD-MONOMER.

Protein family/group databases

TCDBi3.A.1.5.41. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
Oligopeptide transport ATP-binding protein OppD
Gene namesi
Name:oppD
Ordered Locus Names:b1246, JW1238
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG10677. oppD.

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000926581 – 337Oligopeptide transport ATP-binding protein OppDAdd BLAST337

Proteomic databases

PaxDbiP76027.
PRIDEiP76027.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
yejFP339163EBI-560815,EBI-560808

Protein-protein interaction databases

BioGridi4259494. 323 interactors.
DIPiDIP-10408N.
IntActiP76027. 3 interactors.
MINTiMINT-1300671.
STRINGi316385.ECDH10B_1308.

Structurei

3D structure databases

ProteinModelPortaliP76027.
SMRiP76027.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini20 – 269ABC transporterPROSITE-ProRule annotationAdd BLAST250

Sequence similaritiesi

Belongs to the ABC transporter superfamily.Curated

Phylogenomic databases

eggNOGiENOG4105C3U. Bacteria.
COG0444. LUCA.
InParanoidiP76027.
KOiK15583.
PhylomeDBiP76027.

Family and domain databases

InterProiView protein in InterPro
IPR003593. AAA+_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR013563. Oligopep_ABC_C.
IPR027417. P-loop_NTPase.
PfamiView protein in Pfam
PF00005. ABC_tran. 1 hit.
PF08352. oligo_HPY. 1 hit.
SMARTiView protein in SMART
SM00382. AAA. 1 hit.
SUPFAMiSSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR01727. oligo_HPY. 1 hit.
PROSITEiView protein in PROSITE
PS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.

Sequencei

Sequence statusi: Complete.

P76027-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSVIETATVP LAQQQADALL NVKDLRVTFS TPDGDVTAVN DLNFSLRAGE
60 70 80 90 100
TLGIVGESGS GKSQTAFALM GLLAANGRIG GSATFNGREI LNLPEHELNK
110 120 130 140 150
LRAEQISMIF QDPMTSLNPY MRVGEQLMEV LMLHKNMSKA EAFEESVRML
160 170 180 190 200
DAVKMPEARK RMKMYPHEFS GGMRQRVMIA MALLCRPKLL IADEPTTALD
210 220 230 240 250
VTVQAQIMTL LNELKREFNT AIIMITHDLV VVAGICDKVL VMYAGRTMEY
260 270 280 290 300
GNARDVFYQP VHPYSIGLLN AVPRLDAEGE TMLTIPGNPP NLLRLPKGCP
310 320 330
FQPRCPHAME ICSSAPPLEE FTPGRLRACF KPVEELL
Length:337
Mass (Da):37,188
Last modified:October 11, 2004 - v2
Checksum:iB64BAA2C5794F359
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAT48129.1.
AP009048 Genomic DNA. Translation: BAA14778.1.
PIRiA64872.
RefSeqiWP_000110948.1. NZ_LN832404.1.
YP_025300.1. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiAAT48129; AAT48129; b1246.
BAA14778; BAA14778; BAA14778.
GeneIDi945802.
KEGGiecj:JW1238.
eco:b1246.
PATRICifig|1411691.4.peg.1037.

Similar proteinsi

Entry informationi

Entry nameiOPPD_ECOLI
AccessioniPrimary (citable) accession number: P76027
Secondary accession number(s): P77382
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: October 11, 2004
Last modified: October 25, 2017
This is version 141 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families