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Protein

Oligopeptide transport ATP-binding protein OppD

Gene

oppD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Part of the binding-protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi56 – 63ATPPROSITE-ProRule annotation8

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processPeptide transport, Protein transport, Transport
LigandATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciEcoCyc:OPPD-MONOMER
MetaCyc:OPPD-MONOMER

Protein family/group databases

TCDBi3.A.1.5.41 the atp-binding cassette (abc) superfamily

Names & Taxonomyi

Protein namesi
Recommended name:
Oligopeptide transport ATP-binding protein OppD
Gene namesi
Name:oppD
Ordered Locus Names:b1246, JW1238
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG10677 oppD

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000926581 – 337Oligopeptide transport ATP-binding protein OppDAdd BLAST337

Proteomic databases

EPDiP76027
PaxDbiP76027
PRIDEiP76027

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
yejFP339163EBI-560815,EBI-560808

Protein-protein interaction databases

BioGridi4259494, 327 interactors
DIPiDIP-10408N
IntActiP76027, 3 interactors
STRINGi316385.ECDH10B_1308

Structurei

3D structure databases

ProteinModelPortaliP76027
SMRiP76027
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini20 – 269ABC transporterPROSITE-ProRule annotationAdd BLAST250

Sequence similaritiesi

Belongs to the ABC transporter superfamily.Curated

Phylogenomic databases

eggNOGiENOG4105C3U Bacteria
COG0444 LUCA
InParanoidiP76027
KOiK15583
OMAiYEPAHPY
PhylomeDBiP76027

Family and domain databases

InterProiView protein in InterPro
IPR003593 AAA+_ATPase
IPR003439 ABC_transporter-like
IPR017871 ABC_transporter_CS
IPR013563 Oligopep_ABC_C
IPR027417 P-loop_NTPase
PfamiView protein in Pfam
PF00005 ABC_tran, 1 hit
PF08352 oligo_HPY, 1 hit
SMARTiView protein in SMART
SM00382 AAA, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
TIGRFAMsiTIGR01727 oligo_HPY, 1 hit
PROSITEiView protein in PROSITE
PS00211 ABC_TRANSPORTER_1, 1 hit
PS50893 ABC_TRANSPORTER_2, 1 hit

Sequencei

Sequence statusi: Complete.

P76027-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSVIETATVP LAQQQADALL NVKDLRVTFS TPDGDVTAVN DLNFSLRAGE
60 70 80 90 100
TLGIVGESGS GKSQTAFALM GLLAANGRIG GSATFNGREI LNLPEHELNK
110 120 130 140 150
LRAEQISMIF QDPMTSLNPY MRVGEQLMEV LMLHKNMSKA EAFEESVRML
160 170 180 190 200
DAVKMPEARK RMKMYPHEFS GGMRQRVMIA MALLCRPKLL IADEPTTALD
210 220 230 240 250
VTVQAQIMTL LNELKREFNT AIIMITHDLV VVAGICDKVL VMYAGRTMEY
260 270 280 290 300
GNARDVFYQP VHPYSIGLLN AVPRLDAEGE TMLTIPGNPP NLLRLPKGCP
310 320 330
FQPRCPHAME ICSSAPPLEE FTPGRLRACF KPVEELL
Length:337
Mass (Da):37,188
Last modified:October 11, 2004 - v2
Checksum:iB64BAA2C5794F359
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAT48129.1
AP009048 Genomic DNA Translation: BAA14778.1
PIRiA64872
RefSeqiWP_000110948.1, NZ_LN832404.1
YP_025300.1, NC_000913.3

Genome annotation databases

EnsemblBacteriaiAAT48129; AAT48129; b1246
BAA14778; BAA14778; BAA14778
GeneIDi945802
KEGGiecj:JW1238
eco:b1246
PATRICifig|1411691.4.peg.1037

Similar proteinsi

Entry informationi

Entry nameiOPPD_ECOLI
AccessioniPrimary (citable) accession number: P76027
Secondary accession number(s): P77382
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: October 11, 2004
Last modified: March 28, 2018
This is version 144 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health